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List of Studies Used

Author Title Journal Year Pubmed ID Data
Cassemiro et al. Landscape dynamics and diversification of the megadiverse South American freshwater fish fauna PNAS 2023 36595684 1 Tree
Agarwal et al. The evolutionary history of an accidental model organism, the leopard gecko Eublepharis macularius (Squamata: Eublepharidae) MP&E 2022 35032646 1 Tree
Fumia et al. Interactions between breeding system and ploidy affect niche breadth in Solanum Roy Soc Open 2022 35116168 1 Tree
López-Estrada et al. Mitogenomics and hidden-trait models reveal the role of phoresy and host shifts in the diversification of parasitoid blister beetles (Coleoptera: Meloidae Mol Ecol 2022 35146829 1 Tree
Fouquet et al. Diversity, biogeography, and reproductive evolution in the genus Pipa (Amphibia: Anura: Pipidae) MP&E 2022 35192920 1 Tree
Yi et al. Systematics of the New World bats Eptesicus and Histiotus suggest trans-marine dispersal followed by Neotropical cryptic diversification MPE 2022 35810969 1 Tree
Gostel et al. Phylogenomic loci define the generic boundaries of Gochnatieae and improve resolution at the species level in Moquiniastrum (Compositae) MPE 2022 35772621 1 Tree
Frolová et al. Molecular phylogeny and historical biogeography of marine palaemonid shrimps (Palaemonidae: Palaemonella–Cuapetes group) Sci Rep 2022 36075944 1 Tree
Reeve et al. The Sulawesi Thrush (Cataponera turdoides; Aves: Passeriformes) belongs to the genus Turdus. ZooScripta 2022 Google Scholar 1 Tree
Dupin et al. From the Mediterranean to the Pacific: re-circumscription towards Notelaea s.l. and historical biogeography of a generic complex within Oleinae (Oleaceae) Bot J of Lin Soc 2022 Google Scholar 1 Tree
Wang et al. Estimating the Divergence Times of Alphaproteobacteria Based on Mitochondrial Endosymbiosis and Eukaryotic Fossils Env Microb Evol 2022 36083445 1 Tree
Calonje et al. A Time-Calibrated Species Tree Phylogeny of the New World Cycad Genus Zamia L. (Zamiaceae, Cycadales) Int J of Plant Sci 2022 Google Scholar 1 Tree
Cai et al. Integrated phylogenomics and fossil data illuminate the evolution of beetles Roy Soc Open 2022 35345430 1 Tree
Zhao et al. Nuclear phylotranscriptomics and phylogenomics support numerous polyploidization events and hypotheses for the evolution of rhizobial nitrogen-fixing symbiosis in Fabaceae Mol Plant 2022 33631421 1 Tree
Zhao et al. Fingerprints of climatic changes through the late Cenozoic in southern Asian flora: Magnolia section Michelia (Magnoliaceae) Ann Bot 2022 35460565 1 Tree
Calió et al. Spatio-temporal evolution of the catuaba clade in the Neotropics: Morphological shifts correlate with habitat transitions J of Biog 2022 Google Scholar 1 Tree
Frankel et al. Biogeography and ecological drivers of evolution in the Andes: resolving the phylogenetic backbone for Calceolaria (Calceolariaceae) Bot J of Lin Soc 2022 Google Scholar 1 Tree
Bu?ek et al. Molecular phylogeny reveals the past transoceanic voyages of drywood termites (Isoptera, Kalotermitidae) MBD 2022 35511685 1 Tree
Stiller et al. Phylogenomic analysis of Syngnathidae reveals novel relationships, origins of endemic diversity and variable diversification rates BMC Bio 2022 35346180 1 Tree
Zhang et al. Phylotranscriptomic insights into Asteraceae diversity, polyploidy, and morphological innovation J Integr Plant Biol 2022 33559953 1 Tree
Zhang et al. Phylotranscriptomics Resolves the Phylogeny of Pooideae and Uncovers Factors for Their Adaptive Evolution MBE 2022 35134207 1 Tree
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Thode et al. Spatial-temporal evolution and diversification in Sisyrinchium (Iridaceae) with emphasis on abiotic drivers Bot J of Lin Soc 2022 Google Scholar 1 Tree
Johnson et al. Phylogenomics reveals the origin of mammal lice out of Afrotheria Nat Ecol&Evol 2022 35788706 1 Tree
Janiak et al. 205 newly assembled mitogenomes provide mixed evidence for rivers as drivers of speciation for Amazonian primates Mol Ecol 2022 35638312 1 Tree
Frable et al. Biogeographic reconstruction of the migratory Neotropical fish family Prochilodontidae (Teleostei: Characiformes) ZooScripta 2022 Google Scholar 1 Tree
Nielsen et al. Complete mitochondrial genomes from museum specimens clarify millipede evolution in the Eastern Arc Mountains Zoo Linn Soc 2022 Google Scholar 1 Tree
Samayoa et al. Molecular phylogenetics reveals the evolutionary history of marine fishes (Actinopterygii) endemic to the subtropical islands of the Southwest Pacific MPE 2022 35843570 13 Trees
Cannizzaro et al. Gone with Gondwana: Amphipod diversification in freshwaters followed the breakup of the supercontinent MPE 2022 35358695 1 Tree
Freitas et al. Phylogenomic dating and Bayesian biogeography illuminate an antitropical pattern for eucerine bees J of Biog 2022 Google Scholar 1 Tree
Gorneau et al. Huntsman spider phylogeny informs evolution of life history, egg sacs, and morphology MPE 2022 35636670 1 Tree
Pisanti et al. Molecular phylogeny, historical biogeography and revised classification of andrenine bees (Hymenoptera: Andrenidae) MP&E 2022 33741535 1 Tree
Graboski et al. The phylogenetic position of ridley's worm lizard reveals the complex biogeographic history of New World insular amphisbaenids MPE 2022 35577297 1 Tree
McCord et al. Phylogeny of the damselfishes (Pomacentridae) and patterns of asymmetrical diversification in body size and feeding ecology PLOS One 2022 34705840 1 Tree
Mo et al. Resolution, conflict and rate shifts: insights from a densely sampled plastome phylogeny for Rhododendron (Ericaceae) Ann of Bot 2022 36087101 1 Tree
Shivaprakash et al. The flooded habitat adaptation, niche differentiation, and evolution of Myristicaceae trees in the Western Ghats biodiversity hotspot in India Biotropica 2022 Google Scholar 1 Tree
Selvatti et al. Southern hemisphere tectonics in the Cenozoic shaped the pantropical distribution of parrots and passerines J of Biog 2022 Google Scholar 1 Tree
Barber et al. Anti-bat ultrasound production in moths is globally and phylogenetically widespread PNAS 2022 35704762 1 Tree
Price et al. Phylogenomics and Fossil Data Inform the Systematics and Geographic Range Evolution of a Diverse Neotropical Ant Lineage Ins Sys and Div 2022 Google Scholar 1 Tree
Jovanovska et al. Environmental filtering drives assembly of diatom communities over evolutionary time-scales Glob Ecol & Biog 2022 Google Scholar 1 Tree
Fouquet et al. Diversification of the Pristimantis conspicillatus group (Anura: Craugastoridae) within distinct neotropical areas throughout the Neogene Systematics and Biodiversity 2022 Google Scholar 1 Tree
Bitencourt et al. Phylogenetic relationships and the origin of New World soles (Teleostei: Pleuronectiformes: Achiridae): the role of estuarine habitats MPE 2022 36162736 1 Tree
Hughes et al. Concordance and Discordance in the Phylogenomics of the Wrasses and Parrotfishes (Teleostei: Labridae) Syst Biol 2022 36331534 1 Tree
Brownstein et al. Phylogenetics and the Cenozoic radiation of lampreys Cell 2022 36586410 1 Tree
Xu et al. Phylogenetic placement and species delimitation of the crab spider genus Phrynarachne (Araneae: Thomisidae) from China MPE 2022 35577294 1 Tree
Hawlitschek et al. Transcriptomic data reveals nuclear-mitochondrial discordance in Gomphocerinae grasshoppers (Insecta: Orthoptera: Acrididae) MP&E 2022 35189365 1 Tree
Breslin et al. Remarkably rapid, recent diversification of Cochemiea and Mammillaria in the Baja California, Mexico region Am. J. Bot 2022 35979551 1 Tree
Mittan et al. Temporal and spatial diversification along the Amazonia-Cerrado transition in Neotropical treefrogs of the Boana albopunctata species group MPE 2022 35835425 1 Tree
Dogantzis et al. Thrice out of Asia and the adaptive radiation of the western honey bee Sci Adv 2022 34860547 1 Tree
Nash et al. Phylogenomics and body shape morphometrics reveal recent diversification in the goatfishes (Syngnatharia: Mullidae) MPE 2022 35998799 1 Tree
Barbosa et al. Phylogenetic systematics of Yphthimoides Forster, 1964 and related taxa, with notes on the biogeographical history of Yphthimoides species MP&E 2022 35031455 1 Tree
Nitta et al. An open and continuously updated fern tree of life Front Pl Sci 2022 36092417 1 Tree
Chazot et al. Conserved ancestral tropical niche but different continental histories explain the latitudinal diversity gradient in brush-footed butterflies Nature Comm 2021 34588433 1 Tree
Kehlmaier et al. Ancient mitogenomics elucidates diversity of extinct West Indian tortoises. Nat Sci Rep 2021 33564028 1 Tree
Thomson et al. A global phylogeny of turtles reveals a burst of climate-associated diversification on continental margins PNAS 2021 33558231 1 Tree
Toussaint et al. Historical biogeography of Heteropterinae skippers via Beringian and post-Tethyan corridors Zool Scr 2021 Google Scholar 1 Tree
Su et al. Large-Scale Phylogenomic Analyses Reveal the Monophyly of Bryophytes and Neoproterozoic Origin of Land Plants MBE 2021 33871608 1 Tree
Benavides et al. Understanding the real magnitude of the arachnid order Ricinulei through deep Sanger sequencing across its distribution range and phylogenomics, with the formalization of the first species from the Lesser Antilles J of Zoo Sys & Evol Res 2021 Google Scholar 1 Tree
Schools et al. Phylogenetics, classification, and biogeography of the Neotropical forest lizards (Squamata, Diploglossidae) Zootaxa 2021 34186858 1 Tree
Wei et al. Phylogeny and Taxonomy on Cryptic Species of Forked Ferns of Asia Front in Plant Sci 2021 34975938 1 Tree
Méndez-Camacho et al. Biogeographic evidence supports the Old Amazon hypothesis for the formation of the Amazon fluvial system Peer J 2021 34900439 5 Trees
Guo et al. Chloranthus genome provides insights into the early diversification of angiosperms Nat Commun 2021 34836973 1 Tree
Li et al. Reconstruction of the evolutionary biogeography reveal the origins and diversification of oysters (Bivalvia: Ostreidae) MPE 2021 34302948 1 Tree
Scharmann et al. Introgression is widespread in the radiation of carnivorous Nepenthes pitcher plants MPE 2021 34052438 1 Tree
Dugo-Cota et al. Ecomorphological convergence in Eleutherodactylus frogs: a case of replicate radiations in the Caribbean Ecol Letters 2021 30868693 1 Tree
Kolchanova et al. Molecular phylogeny and evolution in the Amazon Parrots in the Greater Antilles Genes 2021 33924228 1 Tree
Machkour-M’Rabet et al. The queen conch mitogenome: intra- and interspecfic mitogenomic variability in Strombidae and phylogenetic considerations within the Hypsogastropoda Nature Sci Rep 2021 34099752 1 Tree
Irisarri et al. Unexpected cryptic species among streptophyte algae most distant to land plants Proc Biol Sci 2021 34814752 1 Tree
Lim et al. Comparative Phylogeography and Phylogeny of Pennah Croakers (Teleostei: Sciaenidae) in Southeast Asian Waters 2021 34946874 1 Tree
Lin et al. Variation in global distribution, population structures, and demographic history for four Trichiurus cutlassfishes Peer J 2021 35003932 1 Tree
Derbyshire et al. Positive selection of transcription factors is a prominent feature of the evolution of a plant pathogenic genus originating in the Miocene. Genome Biology and Evolution. 2021 34289036 1 Tree
Cruaud et al. Evolution, systematics and historical biogeography of sand flies of the subgenus Paraphlebotomus (Diptera, Psychodidae, Phlebotomus) inferred using restriction-site associated DNA markers PLOS Neglected Tropical Diseases 2021 34280193 1 Tree
Ip et al. Genomic insights into the sessile life and biofouling of barnacles (Crustacea: Cirripedia) Heliyon 2021 34189321 1 Tree
Blackburn et al. Phylogeny of African long-fingered frogs (Arthroleptidae: Cardioglossa) reveals recent allopatric divergences in coloration Ichth & Herp 2021 Google Scholar 1 Tree
Guo et al. Extensive Interspecific Gene Flow Shaped Complex Evolutionary History and Underestimated Species Diversity in Rapidly Radiated Dolphins. J Mammal Evol 2021 Google Scholar 1 Tree
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Hánová et al. Diversity, distribution, and evolutionary history of the most studied African rodents, multimammate mice of the genus Mastomys: An overview after a quarter of century of using DNA sequencing J of Zoo Sys & Evol Res 2021 Google Scholar 1 Tree
Kirchman et al. Phylogeny based on ultra-conserved elements clarifies the evolution of rails and allies (Ralloidea) and is the basis for a revised classification Ornithology 2021 Google Scholar 1 Tree
Rícan et al. MtDNA species-level phylogeny and delimitation support significantly underestimated diversity and endemism in the largest Neotropical cichlid genus (Cichlidae: Crenicichla) Peer J 2021 Google Scholar 1 Tree
Wang et al. Phylogenomics of Northeast Asian Pungitius stickelbacks Div and Dist 2021 Google Scholar 1 Tree
Beza-Beza et al. Historical biogeography of New World passalid beetles (Coleoptera, Passalidae) reveals Mesoamerican tropical forests as a centre of origin and taxonomic diversification J Biogeogr 2021 Google Scholar 1 Tree
Bakkes et al. Adaptive radiation and speciation in Rhipicephalus ticks: A medley of novel hosts, nested predator-prey food webs, off-host periods and dispersal along temparature variation gradients Mol Phylogenet Evol 2021 33892098 1 Tree
Yang et al. Mitogenomic phylogeny of mud snails of the mostly Atlantic/Mediterranean genus Tritia (Gastropoda: Nessariidae) Zoo Scripta 2021 Google Scholar 1 Tree
Pillon et al. Phylogenomics and biogeography of Cunoniaceae (Oxalidales) with complete generic sampling and taxonomic realignments Botany 2021 34278558 1 Tree
Borko et al. A subterranean adaptive radiation of amphipods in Europe. Nat Commun 2021 34140494 1 Tree
Tims et al. A fossil-calibrated time-tree of all Australian freshwater fishes MPE 2021 33887481 1 Tree
Gómez et al. Multilocus phylogeny clarifies relationships and diversity within the Micrurus lemniscatus complex (Serpentes: Elapidae) Salamandra 2021 Google Scholar 1 Tree
Podnar et al. Hidden diversity, ancient divergences, and tentative Pleistocene microrefugia of European scorpions (Euscorpiidae: Euscorpiinae) in the eastern Adriatic region. J of Zoo Sys & Evol Res 2021 Google Scholar 1 Tree
Chen et al. Divergence time estimation of Galliformes based on the best gene shopping scheme of ultraconserved elements. BMC Ecol Evol 2021 34809586 1 Tree
Toussaint et al. New Guinean orogenic dynamics and biota evolution revealed using a custom geospatial analysis pipeline BMC Ecol Evo 2021 33823805 1 Tree
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Chang et al. Evolutionary rates of and selective constraints on the mitochondrial genomes of Orthoptera insects with different wing types Mol Phylogenet Evol 2020 31972240 1 Tree
Irisarri I et al. A mitogenomic phylogeny of chitons (Mollusca: Polyplacophora) BMC Evol Biol 2020 32024460 1 Tree
Forni et al. Phylomitogenomics provides new perspectives on the Euphasmatodea radiation (Insecta: Phasmatodea) Mol Phyl & Evol 2020 33059069 1 Tree
Borissov et al. Evolution of Poecilimon jonicusgroup (Orthoptera: Tettigoniidae): a history linked to the Aegean Neogene paleogeography Org Div & Evol 2020 Google Scholar 1 Tree
Jaramillo et al. Vastly underestimated species richness of Amazonian salamanders (Plethodontidae: Bolitoglossa) and implications about plethodontid diversification Mol Phylogenet Evol 2020 32305511 1 Tree
Agarwal et al. Granite boulders act as deep?time climate refugia: A Miocene divergent clade of rupicolous Cnemaspis Strauch, 1887 (Squamata: Gekkonidae) from the Mysore Plateau, India, with descriptions of three new species J Zoo Syst Evol Res 2020 Google Scholar 1 Tree
Li et al. A large-scale systematic framework of Chinese snakes based on a unified multilocus marker system Mol Phylogenet Evol 2020 32268200 1 Tree
Hime et al. Phylogenomics Reveals Ancient Gene Tree Discordance in the Amphibian Tree of Life Syst Biol 2020 32359157 1 Tree
Lozano-Fernandez et al. A Cambrian-Ordovician Terrestrialization of Arachnids Front Genet 2020 32218802 1 Tree
Cao et al. A timetree for phyloplasmas (Mollicutes) with new insights on patterns of evolution and diversification MP&E 2020 32283136 1 Tree
Peña P et al. Radiation of the coralline red algae (Corallinophycidae, Rhodophyta) crown group as inferred from a multilocus time-calibrated phylogeny Mol Phylogenet Evol 2020 32360706 1 Tree
Kolmann et al. Phylogenomics of piranhas and pacus (Serrasalmidae) uncovers how dietary convergence and parallelism obfuscate traditional morphological taxonomy Syst Biol 2020 32785670 1 Tree
Roos et al. Mitogenomic phylogeny of the Asian colobine genus Trachypithecus with special focus on Trachypithecus phayrei (Blyth, 1847) and description of a new species Zool Res 2020 33171548 1 Tree
Zhang et al. Asterid Phylogenomics/Phylotranscriptomics Uncover Morphological Evolutionary Histories and Support Phylogenetic Placement for Numerous Whole-Genome Duplications Mol Biol Evol 2020 32652014 1 Tree
Esquerré et al. Phylogenomics, biogeography and morphometircs reveal rapid phenotypic evolution in pythons after crossing Wallace's line Systematic Biology 2020 32208482 1 Tree
Sanders et al. Raising names from the dead: A time-calibrated phylogeny of frog shells (Bursidae, Tonnoidea, Gastropoda) using mitogenomic data Mol Phyl & Evol 2020 33310060 1 Tree
Vasilikopoulos et al. An integrative phylogenomic approach to elucidate the evolutionary history and divergence times of Neuropterida (Insecta: Holometabola) BMC Evol Biol 2020 32493355 1 Tree
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Ramírez-Barahona et al. The delayed and geographically heterogeneous diversification of flowering plant families Nat Ecol&Evol 2020 32632260 1 Tree
Meireles et al. Leaf reflectance spectra capture the evolutionary history of seed plants New Phytologist 2020 32579721 1 Tree
Wiemers et al. A complete time-calibrated multi-gene phylogeny of the European butterflies Zookeys 2020 32550787 1 Tree
Maurin et al. A dated phylogeny of the genus Pennantia (Pennantiaceae) based on whole chloroplast genome and nuclear ribosomal 18S-26S repeat region sequences PhytoKeys 2020 32863722 1 Tree
Shen et al. Genome-scale phylogeny and contrasting modes of genome evolution in the fungal phylum Ascomycota Sci Adv 2020 33148650 1 Tree
Howard et al. Arachnid monophyly: morphological, palaeontological and molecular support for a single terrestrialization within Chelicerata Arthropod structure and Development 2020 33039753 1 Tree
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Musher et al. Why is Amazonia a 'source' of biodiversity? Climate-mediated dispersal and synchronous speciation across the Andes in an avian group (Tityrinae) Proc R Biol Sci B 2019 30940057 1 Tree
Chazot et al. Priors and Posteriors in Bayesian timing of divergence analyses: the age of butterflies revisited Sys Bio 2019 30690622 1 Tree
Gallaher et al. Leaf shape and size track habitat transitions across forest–grassland boundaries in the grass family (Poaceae) Evolution: International Journal of Organic Evolution 2019 30874302 5 Trees
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Pichardo-Marcanoa et al. Phylogeny, historical biogeography and diversification rates in an economically important group of Neotropical palms: Tribe Euterpeae Molecular phylogenetics and evolution 2019 30594734 1 Tree
Maul et al. Morphology, geographic distribution, and host preferences are poor predictors of phylogenetic relatedness in the mistletoe genus Viscum L. Molecular phylogenetics and evolution 2019 30399429 1 Tree
Stervander et al. The origin of the world’s smallest flightless bird, the Inaccessible Island Rail Atlantisia rogersi (Aves: Rallidae) Molecular phylogenetics and evolution 2019 30321695 1 Tree
Gamisch et al. Clade-age-dependent diversification under high species turnover shapes species richness disparities among tropical rainforest lineages of Bulbophyllum (Orchidaceae) BMC evolutionary biology 2019 31014234 1 Tree
Aguiar et al. Biogeography and early diversification of Tapinotaspidini oil-bees support presence of Paleocene savannas in South America MP&E 2019 31770589 1 Tree
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Gonçalves et al. The role of climatic cycles and trans-Saharan migration corridors in species diversification: Biogeography of Psammophis schokari group in North Africa. Mol Phylogenet Evol 2018 28919506 1 Tree
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Smissen et al. Repeated biome transitions in the evolution of Australian rodents. Mol Phylogenet Evol 2018 30075296 1 Tree
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Bover et al. Molecular phylogenetics supports the origin of an endemic Balearic shrew lineage (Nesiotites) coincident with the Messinian Salinity Crisis. Mol Phylogenet Evol 2018 29608962 1 Tree
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Beasley-Hall et al. A revised phylogeny of macropathine cave crickets (Orthoptera: Rhaphidophoridae) uncovers a paraphyletic Australian fauna. Mol Phylogenet Evol 2018 29678644 1 Tree
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