Author	Title	Journal	Year	PubMed ID
Cox et al.	Divergence times and colonization of the Canary Islands by Gallotia lizards.	Mol Phylogenet Evol	2010	20307675
Schulte et al.	Live birth among Iguanian lizards predates Pliocene--Pleistocene glaciations.	Biol Lett	2010	19812068
Jeyaprakash et al.	First divergence time estimate of spiders, scorpions, mites and ticks (subphylum: Chelicerata) inferred from mitochondrial phylogeny.	Exp Appl Acarol	2009	18931924
Herron et al.	Triassic origin and early radiation of multicellular volvocine algae.	Proc Natl Acad Sci U S A	2009	19223580
Moore et al.	A Bayesian approach for evaluating the impact of historical events on rates of diversification.	Proc Natl Acad Sci U S A	2009	19251663
Wang et al.	Rosid radiation and the rapid rise of angiosperm-dominated forests.	Proc Natl Acad Sci U S A	2009	19223592
Sauquet et al.	Contrasted patterns of hyperdiversification in Mediterranean hotspots.	Proc Natl Acad Sci U S A	2009	19116275
Moyle et al.	Explosive Pleistocene diversification and hemispheric expansion of a "great speciator".	Proc Natl Acad Sci U S A	2009	19181851
Pyron et al.	Neogene diversification and taxonomic stability in the snake tribe Lampropeltini (Serpentes: Colubridae).	Mol Phylogenet Evol	2009	19236930
Battistuzzi et al.	A major clade of prokaryotes with ancient adaptations to life on land.	Mol Biol Evol	2009	18988685
Sato et al.	Deciphering and dating the red panda's ancestry and early adaptive radiation of Musteloidea.	Mol Phylogenet Evol	2009	19699810
Phillips et al.	Molecules, morphology, and ecology indicate a recent, amphibious ancestry for echidnas.	Proc Natl Acad Sci U S A	2009	19805098
Antonelli et al.	Tracing the impact of the Andean uplift on Neotropical plant evolution.	Proc Natl Acad Sci U S A	2009	19470489
Verbruggen et al.	A multi-locus time-calibrated phylogeny of the siphonous green algae.	Mol Phylogenet Evol	2009	19141323
Jonniaux et al.	Molecular phylogenetic and dating analyses using mitochondrial DNA sequences of eyelid geckos (Squamata: Eublepharidae).	Gene	2008	18029117
Vidal et al.	Origin of tropical American burrowing reptiles by transatlantic rafting.	Biol Lett	2008	18077239
Chojnowski et al.	Introns outperform exons in analyses of basal avian phylogeny using clathrin heavy chain genes.	Gene	2008	18191344
Peterson et al.	The Ediacaran emergence of bilaterians: congruence between the genetic and the geological fossil records.	Philos Trans R Soc Lond B Biol Sci	2008	18192191
Rowe et al.	The oldest platypus and its bearing on divergence timing of the platypus and echidna clades.	Proc Natl Acad Sci U S A	2008	18216270
Sanders et al.	Molecular evidence for a rapid late-Miocene radiation of Australasian venomous snakes (Elapidae, Colubroidea).	Mol Phylogenet Evol	2008	18222097
Burbrink et al.	The taming of the skew: estimating proper confidence intervals for divergence dates.	Syst Biol	2008	18432552
Gamble et al.	Evidence for Gondwanan vicariance in an ancient clade of gecko lizards	J. Biogeogr.	2008	None
Pérez-Losada et al.	The tempo and mode of barnacle evolution.	Mol Phylogenet Evol	2008	18032070
Brown et al.	Strong mitochondrial DNA support for a Cretaceous origin of modern avian lineages.	BMC Biol	2008	18226223
Wüster et al.	A nesting of vipers: Phylogeny and historical biogeography of the Viperidae (Squamata: Serpentes).	Mol Phylogenet Evol	2008	18804544
Bertone et al.	Phylogenetics and temporal diversification of the earliest true flies (Insecta: Diptera) based on multiple nuclear genes	Syst. Entomol	2008	None
Smith et al.	Rates of molecular evolution are linked to life history in flowering plants.	Science	2008	18832643
Bon et al.	Deciphering the complete mitochondrial genome and phylogeny of the extinct cave bear in the Paleolithic painted cave of Chauvet.	Proc Natl Acad Sci U S A	2008	18955696
Schultz et al.	Major evolutionary transitions in ant agriculture.	Proc Natl Acad Sci U S A	2008	18362345
Ho et al.	Correlating Bayesian date estimates with climatic events and domestication using a bovine case study.	Biol Lett	2008	18426745
Gamble et al.	Tertiary climate change and the diversification of the Amazonian gecko genus Gonatodes (Sphaerodactylidae, Squamata).	Mol Phylogenet Evol	2008	17919937
Renner et al.	Rooting and dating maples (Acer) with an uncorrelated-rates molecular clock: implications for north American/Asian disjunctions.	Syst Biol	2008	18853365
Quek et al.	The geography of diversification in mutualistic ants: a gene's-eye view into the Neogene history of Sundaland rain forests.	Mol Ecol	2007	17498231
Ayoub et al.	Utility of the nuclear protein-coding gene, elongation factor-1 gamma (EF-1gamma), for spider systematics, emphasizing family level relationships of tarantulas and their kin (Araneae: Mygalomorphae).	Mol Phylogenet Evol	2007	16971146
Hendrixson et al.	Molecular phylogeny and biogeography of an ancient Holarctic lineage of mygalomorph spiders (Araneae: Antrodiaetidae: Antrodiaetus).	Mol Phylogenet Evol	2007	17101284
Wang et al.	Phylogenetic origins of the Himalayan endemic Dolomiaea, Diplazoptilon and Xanthopappus (Asteraceae: Cardueae) based on three DNA regions.	Ann Bot (Lond)	2007	17218340
Reed et al.	Evolutionary relationships of Drosophila mojavensis geographic host races and their sister species Drosophila arizonae.	Mol Ecol	2007	17305857
Reed et al.	Pair of lice lost or parasites regained: the evolutionary history of anthropoid primate lice.	BMC Biol	2007	17343749
Munkacsi et al.	Domestication of maize, sorghum, and sugarcane did not drive the divergence of their smut pathogens.	Evolution	2007	17348948
Putnam et al.	Discordant divergence times among Z-chromosome regions between two ecologically distinct swallowtail butterfly species.	Evolution	2007	17439621
Nikula et al.	Diversity and trans-arctic invasion history of mitochondrial lineages in the North Atlantic Macoma balthica complex (Bivalvia: Tellinidae).	Evolution	2007	17439622
Apte et al.	Mitochondrial phylogeography of New Zealand freshwater crayfishes, Paranephrops spp.	Mol Ecol	2007	17444900
Manos et al.	Phylogeny of extant and fossil Juglandaceae inferred from the integration of molecular and morphological data sets.	Syst Biol	2007	17558964
Steinfartz et al.	A Bayesian approach on molecules and behavior: reconsidering phylogenetic and evolutionary patterns of the Salamandridae with emphasis on Triturus newts.	J Exp Zoolog B Mol Dev Evol	2007	16969762
Almeida et al.	Phylogeny and temporal diversification of Calomys (Rodentia, Sigmodontinae): implications for the biogeography of an endemic genus of the open/dry biomes of South America.	Mol Phylogenet Evol	2007	16971145
León-Paniagua et al.	Diversification of the arboreal mice of the genus Habromys (Rodentia: Cricetidae: Neotominae) in the Mesoamerican highlands.	Mol Phylogenet Evol	2007	17070711
Rocha et al.	Phylogenetic affinities of Comoroan and East African day geckos (genus Phelsuma): multiple natural colonisations, introductions and island radiations.	Mol Phylogenet Evol	2007	17113791
Colangelo et al.	Evolutionary systematics in African gerbilline rodents of the genus Gerbilliscus: inference from mitochondrial genes.	Mol Phylogenet Evol	2007	17113792
Peng et al.	Age and biogeography of major clades in sturgeons and paddlefishes (Pisces: Acipenseriformes).	Mol Phylogenet Evol	2007	17158071
Guha et al.	Molecular phylogeny of musk deer: a genomic view with mitochondrial 16S rRNA and cytochrome b gene.	Mol Phylogenet Evol	2007	17158073
Wiens et al.	Phylogenetic history underlies elevational biodiversity patterns in tropical salamanders.	Proc Biol Sci	2007	17284409
Horner et al.	Phylogenetic analyses of complete mitochondrial genome sequences suggest a basal divergence of the enigmatic rodent Anomalurus.	BMC Evol Biol	2007	17288612
Rüber et al.	Evolution of miniaturization and the phylogenetic position of Paedocypris, comprising the world's smallest vertebrate.	BMC Evol Biol	2007	17355618
Genner et al.	Age of cichlids: new dates for ancient lake fish radiations.	Mol Biol Evol	2007	17369195
Albert et al.	Phylogeographical and speciation patterns in subterranean worm lizards of the genus Blanus (Amphisbaenia: Blanidae).	Mol Ecol	2007	17391273
Huchon et al.	Multiple molecular evidences for a living mammalian fossil.	Proc Natl Acad Sci U S A	2007	17452635
Smith et al.	A phylogenetic perspective on elevational species richness patterns in Middle American treefrogs: why so few species in lowland tropical rainforests?	Evolution	2007	17492971
Marjanović et al.	Fossils, molecules, divergence times, and the origin of lissamphibians.	Syst Biol	2007	17520502
Heinicke et al.	Major Caribbean and Central American frog faunas originated by ancient oceanic dispersal.	Proc Natl Acad Sci U S A	2007	17548823
Brammer et al.	Evolutionary history of Stratiomyidae (Insecta: Diptera): the molecular phylogeny of a diverse family of flies.	Mol Phylogenet Evol	2007	17070710
Pérez et al.	Phylogeny and biogeography of 91 species of heroine cichlids (Teleostei: Cichlidae) based on sequences of the cytochrome b gene.	Mol Phylogenet Evol	2007	17045493
Shepherd et al.	The relationships and origins of the New Zealand wattlebirds (Passeriformes, Callaeatidae) from DNA sequence analyses.	Mol Phylogenet Evol	2007	17369056
Hubert et al.	Phylogeography of the piranha genera Serrasalmus and Pygocentrus: implications for the diversification of the Neotropical ichthyofauna.	Mol Ecol	2007	17498236
Tinti et al.	Mitochondrial DNA variation, phylogenetic relationships, and evolution of four Mediterranean genera of soles (Soleidae, Pleuronectiformes)	MARINE BIOTECHNOLOGY	2007	None
Vences et al.	Reconciling fossils and molecules: Cenozoic divergence of cichlid fishes and the biogeography of Madagascar	JOURNAL OF BIOGEOGRAPHY	2007	None
Wilke et al.	Salenthydrobia gen. nov (Rissooidea : Hydrobiidae): a potential relict of the Messinian salinity crisis	ZOOLOGICAL JOURNAL OF THE LINNEAN SOCIETY	2007	None
Zhang et al.	Phylogeny and quaternary history of the European montane/alpine endemic Soldanella (Primulaceae) based on ITS and AFLP variation	AMERICAN JOURNAL OF BOTANY	2007	None
Zhang et al.	The deepest splits in Chloranthaceae as resolved by chloroplast sequences	INTERNATIONAL JOURNAL OF PLANT SCIENCES	2007	None
Zhong et al.	Testing relative evolutionary rates and estimating divergence times among six genera of Rhizophoraceae using cpDNA and nrDNA sequences	CHINESE SCIENCE BULLETIN	2007	None
Yoo et al.	Divergence times and historical biogeography of Nymphaeales	SYSTEMATIC BOTANY	2007	None
Bergmann et al.	The First Complete cDNA Sequence of the Hemocyanin from a Bivalve, the Protobranch Nucula nucleus	J Mol Evol	2007	None
Medlin et al.	A taxonomic review of the genus Phaeocystis	BIOGEOCHEMISTRY	2007	None
Zhang et al.	Phylogeny and Biogeography of Epimedium/Vancouveria (Berberidaceae): Western North American - East Asian Disjunctions, the Origin of European Mountain Plant Taxa, and East Asian Species Diversity	SYSTEMATIC BOTANY	2007	None
Wikstrom et al.	Evolution of the angiosperms: calibrating the family tree	PROCEEDINGS OF THE ROYAL SOCIETY OF LONDON SERIES B-BIOLOGICAL SCIENCES	2007	None
Voelker et al.	Dispersal, vicariance, and clocks: Historical biogeography and speciation in a cosmopolitan passerine genus (Anthus : motacillidae)	EVOLUTION	2007	None
Zink et al.	The shifting roles of dispersal and vicariance in biogeography	PROCEEDINGS OF THE ROYAL SOCIETY OF LONDON SERIES B-BIOLOGICAL SCIENCES	2007	None
Zuccarello et al.	Phylogeography of the Bostrychia calliptera-B-pinnata complex (Rhodomelaceae, Rhodophyta) and divergence rates based on nuclear, mitochondrial and plastid DNA markers	PHYCOLOGIA	2007	None
Xiang et al.	Origin and biogeography of Aesculus L. (Hippocastanaceae): A molecular phylogenetic perspective	EVOLUTION	2007	None
Balke et al.	Infrequent and unidirectional colonization of hyperdiverse Papuadytes diving beetles in New Caledonia and New Guinea.	Mol Phylogenet Evol	2007	16979911
Contreras-Díaz et al.	Evolution and diversification of the forest and hypogean ground-beetle genus Trechus in the Canary Islands.	Mol Phylogenet Evol	2007	17116412
Berbee et al.	Rhynie chert: a window into a lost world of complex plant-fungus interactions.	New Phytol	2007	17447903
Bunje et al.	Lineage divergence of a freshwater snail clade associated with post-Tethys marine basin development.	Mol Phylogenet Evol	2007	16949309
Winterton et al.	Phylogeny and Bayesian divergence time estimations of small-headed flies (Diptera: Acroceridae) using multiple molecular markers.	Mol Phylogenet Evol	2007	17196837
Roelants et al.	Global patterns of diversification in the history of modern amphibians.	Proc Natl Acad Sci U S A	2007	17213318
Murphy et al.	Using genomic data to unravel the root of the placental mammal phylogeny.	Genome Res	2007	17322288
Bininda-Emonds et al.	The delayed rise of present-day mammals.	Nature	2007	17392779
Fain et al.	Phylogeny of "core Gruiformes" (Aves: Grues) and resolution of the Limpkin-Sungrebe problem.	Mol Phylogenet Evol	2007	17419074
Miller-Butterworth et al.	A family matter: conclusive resolution of the taxonomic position of the long-fingered bats, miniopterus.	Mol Biol Evol	2007	17449895
Hurley et al.	A new time-scale for ray-finned fish evolution.	Proc Biol Sci	2007	17476768
Hugall et al.	Calibration choice, rate smoothing, and the pattern of tetrapod diversification according to the long nuclear gene RAG-1.	Syst Biol	2007	17654361
Roos et al.	Extended mitogenomic phylogenetic analyses yield new insight into crocodylian evolution and their survival of the Cretaceous-Tertiary boundary.	Mol Phylogenet Evol	2007	17719245
Wiens et al.	Global patterns of diversification and species richness in amphibians.	Am Nat	2007	17874387
Arnason et al.	Mitogenomic analyses of caniform relationships.	Mol Phylogenet Evol	2007	17919938
Janecka et al.	Molecular and genomic data identify the closest living relative of primates.	Science	2007	17975064
de Vargas et al.	Origin and evolution of coccolithophores: from coastal hunters to oceanic farmers.	in Evolution of Primary Producers in the Sea	2007	None
Brown et al.	Nuclear DNA does not reconcile 'rocks' and 'clocks' in Neoaves: a comment on Ericson et al.	Biol Lett	2007	17389215
Hunt et al.	A comprehensive phylogeny of beetles reveals the evolutionary origins of a superradiation.	Science	2007	18096805
Cartwright et al.	Fossils and phylogenies: integrating multiple lines of evidence to investigate the origin of early major metazoan lineages	Comp. Biol.	2007	None
Medlin et al.	A molecular clock for coccolithophores and implications for selectivity of phytoplankton extinctions across the K/T boundary	Mar. Micropaleontol.	2007	None
Sorhannus et al.	A nuclear-encoded small-subunit ribosomal RNA timescale for diatom evolution	Mar. Micropaleont.	2007	None
Baker et al.	Phylogenetic relationships and divergence times of Charadriiformes genera: multigene evidence for the Cretaceous origin of at least 14 clades of shorebirds.	Biol Lett	2007	17284401
Ramírez et al.	Dating the origin of the Orchidaceae from a fossil orchid with its pollinator.	Nature	2007	17728756
Lukes et al.	Evolutionary and geographical history of the Leishmania donovani complex with a revision of current taxonomy.	Proc Natl Acad Sci U S A	2007	17517634
Moore et al.	Using plastid genome-scale data to resolve enigmatic relationships among basal angiosperms.	Proc Natl Acad Sci U S A	2007	18048334
Vieites et al.	Rapid diversification and dispersal during periods of global warming by plethodontid salamanders.	Proc Natl Acad Sci U S A	2007	18077422
Wheat et al.	The genetic basis of a plant-insect coevolutionary key innovation.	Proc Natl Acad Sci U S A	2007	18077380
Havill et al.	Evolution of host specialization in the Adelgidae (Insecta: Hemiptera) inferred from molecular phylogenetics.	Mol Phylogenet Evol	2007	17196838
Lang et al.	Molecular evidence for an Asian origin and a unique westward migration of species in the genus Castanea via Europe to North America.	Mol Phylogenet Evol	2007	17098448
Forest et al.	Diversification of a large genus in a continental biodiversity hotspot: temporal and spatial origin of Muraltia (Polygalaceae) in the Cape of South Africa.	Mol Phylogenet Evol	2007	17049279
Wilson et al.	Steady diversification of derived liverworts under Tertiary climatic fluctuations.	Biol Lett	2007	17686755
Weeks et al.	Molecular phylogenetic analysis of Commiphora (Burseraceae) yields insight on the evolution and historical biogeography of an "impossible" genus.	Mol Phylogenet Evol	2007	16904915
Nazari et al.	Phylogeny, historical biogeography, and taxonomic ranking of Parnassiinae (Lepidoptera, Papilionidae) based on morphology and seven genes.	Mol Phylogenet Evol	2007	16919972
Genner et al.	Amassing diversity in an ancient lake: evolution of a morphologically diverse parthenogenetic gastropod assemblage in Lake Malawi.	Mol Ecol	2007	17257110
Hedges et al.	Molecular phylogeny and biogeography of West Indian frogs of the genus Leptodactylus (Anura, Leptodactylidae).	Mol Phylogenet Evol	2007	17196836
Willyard et al.	Fossil calibration of molecular divergence infers a moderate mutation rate and recent radiations for pinus.	Mol Biol Evol	2007	16997907
Koepfli et al.	Phylogeny of the Procyonidae (Mammalia: Carnivora): molecules, morphology and the Great American Interchange.	Mol Phylogenet Evol	2007	17174109
Makokha et al.	Nuclear and mtDNA-based phylogeny of southern African sand lizards, Pedioplanis (Sauria: Lacertidae).	Mol Phylogenet Evol	2007	17588779
Schmitz et al.	Molecular phylogeny and dating of an insular endemic moth radiation inferred from mitochondrial and nuclear genes: the genus Galagete (Lepidoptera: Autostichidae) of the Galapagos Islands.	Mol Phylogenet Evol	2007	17604184
Giugliano et al.	Molecular dating and phylogenetic relationships among Teiidae (Squamata) inferred by molecular and morphological data.	Mol Phylogenet Evol	2007	17618129
Price et al.	Patterns and processes underlying evolutionary significant units in the Platypleura stridula L. species complex (Hemiptera: Cicadidae) in the Cape Floristic Region, South Africa.	Mol Ecol	2007	17561914
Pastene et al.	Radiation and speciation of pelagic organisms during periods of global warming: the case of the common minke whale, Balaenoptera acutorostrata.	Mol Ecol	2007	17391271
Wood et al.	A molecular phylogeny of the marine mussel genus Perna (Bivalvia: Mytilidae) based on nuclear (ITS1&2) and mitochondrial (COI) DNA sequences.	Mol Phylogenet Evol	2007	17292632
Amer et al.	The mitochondrial genome of the lizard Calotes versicolor and a novel gene inversion in South Asian draconine agamids.	Mol Biol Evol	2007	17379622
Pringle et al.	Synteny and chromosome evolution in the lepidoptera: evidence from mapping in Heliconius melpomene.	Genetics	2007	17603110
Wang et al.	Molecular evidence for the monophyly of East Asian groups of Cyprinidae (Teleostei: Cypriniformes) derived from the nuclear recombination activating gene 2 sequences.	Mol Phylogenet Evol	2007	16919973
Ziegler et al.	Molecular phylogeny and evolutionary history of Southeast Asian macaques forming the M. silenus group.	Mol Phylogenet Evol	2007	17208017
Hrbek et al.	A phylogenetic and biogeographic perspective on the evolution of poeciliid fishes.	Mol Phylogenet Evol	2007	17185005
Forest et al.	The role of biotic and abiotic factors in evolution of ant dispersal in the milkwort family (polygalaceae).	Evolution	2007	17598748
Jing et al.	Phylogenetic relationships in genus Niviventer (Rodentia: Muridae) in China inferred from complete mitochondrial cytochrome b gene.	Mol Phylogenet Evol	2007	17531508
Rohland et al.	Proboscidean mitogenomics: chronology and mode of elephant evolution using mastodon as outgroup.	PLoS Biol	2007	17676977
Bell et al.	Phylogenetic placement and biogeography of the North American species of Valerianella (Valerianaceae: Dipsacales) based on chloroplast and nuclear DNA.	Mol Phylogenet Evol	2007	17627854
Hallström et al.	Phylogenomic data analyses provide evidence that Xenarthra and Afrotheria are sister groups.	Mol Biol Evol	2007	17630282
Zimmer et al.	Dating the early evolution of plants: detection and molecular clock analyses of orthologs.	Mol Genet Genomics	2007	17593393
Lymberakis et al.	Mitochondrial phylogeography of Rana (Pelophylax) populations in the Eastern Mediterranean region.	Mol Phylogenet Evol	2007	17467301
Zhang et al.	A phylogeny of Anisophylleaceae based on six nuclear and plastid loci: ancient disjunctions and recent dispersal between South America, Africa, and Asia.	Mol Phylogenet Evol	2007	17433719
Gaubert et al.	Re-assessed molecular phylogeny and evolutionary scenario within genets (Carnivora, Viverridae, Genettinae).	Mol Phylogenet Evol	2007	17275350
Morgan et al.	Molecular phylogenetic dating supports an ancient endemic speciation model in Australia's biodiversity hotspot.	Mol Phylogenet Evol	2007	17275343
Pasquet et al.	Evolutionary history and biogeography of the drongos (Dicruridae), a tropical Old World clade of corvoid passerines.	Mol Phylogenet Evol	2007	17468015
Smith et al.	Origins of social parasitism: the importance of divergence ages in phylogenetic studies.	Mol Phylogenet Evol	2007	17433725
Yamamoto et al.	Phylogeny of the Geometridae and the evolution of winter moths inferred from a simultaneous analysis of mitochondrial and nuclear genes.	Mol Phylogenet Evol	2007	17363285
Hyde et al.	The origin, evolution, and diversification of rockfishes of the genus Sebastes (Cuvier).	Mol Phylogenet Evol	2007	17320419
Zhang et al.	Phylogeny, evolution, and biogeography of Asiatic Salamanders (Hynobiidae).	Proc Natl Acad Sci U S A	2006	16648252
Noonan et al.	Vicariant origin of malagasy reptiles supports late cretaceous antarctic land bridge.	Am Nat	2006	17109316
Tavares et al.	Phylogenetic relationships and historical biogeography of neotropical parrots (Psittaciformes: Psittacidae: Arini) inferred from mitochondrial and nuclear DNA sequences.	Syst Biol	2006	16861209
Seki et al.	The origin of the East Asian Erithacus robin, Erithacus komadori, inferred from cytochrome b sequence data.	Mol Phylogenet Evol	2006	16529957
Burns et al.	Phylogenetics and evolution of bell frogs (Litoria aurea species-group, Anura: Hylidae) based on mitochondrial ND4 sequences.	Mol Phylogenet Evol	2006	16384717
Slack et al.	Early penguin fossils, plus mitochondrial genomes, calibrate avian evolution.	Molecular biology and evolution	2006	16533822
Sasaki et al.	Balaenoptera omurai is a newly discovered baleen whale that represents an ancient evolutionary lineage.	Mol Phylogenet Evol	2006	16843687
Koepfli et al.	Molecular systematics of the Hyaenidae: relationships of a relictual lineage resolved by a molecular supermatrix.	Mol Phylogenet Evol	2006	16503281
Wiens et al.	Why does a trait evolve multiple times within a clade? Repeated evolution of snakelike body form in squamate reptiles.	Evolution; international journal of organic evolution	2006	16568638
Hughes et al.	Molecular phylogeny of the extinct giant deer, Megaloceros giganteus.	Mol Phylogenet Evol	2006	16556506
Gilbert et al.	Mitochondrial and nuclear phylogenies of Cervidae (Mammalia, Ruminantia): Systematics, morphology, and biogeography.		2006	16584894
Krause et al.	Multiplex amplification of the mammoth mitochondrial genome and the evolution of Elephantidae.	Nature	2006	16362058
Douglas et al.	Evolution of rattlesnakes (Viperidae; Crotalus) in the warm deserts of western North America shaped by Neogene vicariance and Quaternary climate change.	Mol Ecol	2006	16968275
Neumann et al.	Molecular phylogeny of the Cricetinae subfamily based on the mitochondrial cytochrome b and 12S rRNA genes and the nuclear vWF gene.	Mol Phylogenet Evol	2006	16483801
Pereira et al.	A molecular timescale for galliform birds accounting for uncertainty in time estimates and heterogeneity of rates of DNA substitutions across lineages and sites.	Mol Phylogenet Evol	2006	16112881
Rogaev et al.	Complete mitochondrial genome and phylogeny of Pleistocene mammoth Mammuthus primigenius.	PLoS Biol	2006	16448217
Gaubert et al.	Phylogenetic systematics and tempo of evolution of the Viverrinae (Mammalia, Carnivora, Viverridae) within feliformians: implications for faunal exchanges between Asia and Africa.	Mol Phylogenet Evol	2006	16837215
Bossuyt et al.	Phylogeny and biogeography of a cosmopolitan frog radiation: Late cretaceous diversification resulted in continent-scale endemism in the family ranidae.	Systematic biology	2006	16857652
Kozak et al.	Rapid lineage accumulation in a non-adaptive radiation: phylogenetic analysis of diversification rates in eastern North American woodland salamanders (Plethodontidae: Plethodon).	Proc Biol Sci	2006	16537124
Pereira et al.	A mitogenomic timescale for birds detects variable phylogenetic rates of molecular evolution and refutes the standard molecular clock.	Mol Biol Evol	2006	16774978
Baker et al.	Multiple gene evidence for expansion of extant penguins out of Antarctica due to global cooling.	Proceedings. Biological sciences / The Royal Society	2006	16519228
Bunch et al.	Phylogenetic analysis of snow sheep (Ovis nivicola) and closely related taxa.	J Hered	2006	16267166
Tolley et al.	Biogeographic patterns and phylogeography of dwarf chameleons (Bradypodion) in an African biodiversity hotspot.	Mol Ecol	2006	16499702
Mueller et al.	Evolutionary rates, divergence dates, and the performance of mitochondrial genes in Bayesian phylogenetic analysis.	Syst Biol	2006	16611600
Yang et al.	Bayesian estimation of species divergence times under a molecular clock using multiple fossil calibrations with soft bounds.	Mol Biol Evol	2006	16177230
Ropiquet et al.	Hybrid origin of the Pliocene ancestor of wild goats.	Mol Phylogenet Evol	2006	16837213
Jansa et al.	The pattern and timing of diversification of Philippine endemic rodents: evidence from mitochondrial and nuclear gene sequences.	Syst Biol	2006	16507525
Noonan et al.	Dispersal and vicariance: the complex evolutionary history of boid snakes.	Mol Phylogenet Evol	2006	16624591
Wiens et al.	Evolutionary and ecological causes of the latitudinal diversity gradient in hylid frogs: treefrog trees unearth the roots of high tropical diversity.	Am Nat	2006	17080358
Poux et al.	Arrival and diversification of caviomorph rodents and platyrrhine primates in South America.	Syst Biol	2006	16551580
Steiper et al.	Primate molecular divergence dates.	Mol Phylogenet Evol	2006	16815047
Yu et al.	Phylogeny and biogeography of the Petaurista philippensis complex (Rodentia: Sciuridae), inter- and intraspecific relationships inferred from molecular and morphometric analysis.	Mol Phylogenet Evol	2006	16414285
Arnason et al.	Pinniped phylogeny and a new hypothesis for their origin and dispersal.	Mol Phylogenet Evol	2006	16815048
Martínez-Solano et al.	Mitochondrial DNA phylogeography of Lissotriton boscai (Caudata, Salamandridae): evidence for old, multiple refugia in an Iberian endemic.	Mol Ecol	2006	16968276
Ericson et al.	Diversification of Neoaves: integration of molecular sequence data and fossils.	Biol Lett	2006	17148284
Opazo et al.	Phylogenetic relationships and divergence times among New World monkeys (Platyrrhini, Primates).	Mol Phylogenet Evol	2006	16698289
van et al.	The platypus is in its place: nuclear genes and indels confirm the sister group relation of monotremes and Therians.	Mol Biol Evol	2006	16291999
Fleischer et al.	Mid-Pleistocene divergence of Cuban and North American ivory-billed woodpeckers.	Biol Lett	2006	17148432
Bakke et al.	Molecular phylogenetics of gadidae and related gadiformes based on mitochondrial DNA sequences.	Mar Biotechnol (NY)	2006	15759085
Liu et al.	Radiation and diversification within the Ligularia-Cremanthodium-Parasenecio complex (Asteraceae) triggered by uplift of the Qinghai-Tibetan Plateau.	Mol Phylogenet Evol	2006	16290033
Jansen et al.	Phylogenetic relationships and divergence time estimate of African anguilliform catfish (Siluriformes: Clariidae) inferred from ribosomal gene and spacer sequences.	Mol Phylogenet Evol	2006	16290035
Blattner et al.	Multiple intercontinental dispersals shaped the distribution area of Hordeum (Poaceae).	New Phytol	2006	16411962
Ickert-Bond et al.	Phylogeny and biogeography of Altingiaceae: evidence from combined analysis of five non-coding chloroplast regions.	Mol Phylogenet Evol	2006	16439163
Ketmaier et al.	Molecular phylogeny and historical biogeography of the land snail genus Solatopupa (Pulmonata) in the peri-Tyrrhenian area.	Mol Phylogenet Evol	2006	16442313
Krzywinski et al.	Analysis of the complete mitochondrial DNA from Anopheles funestus: an improved dipteran mitochondrial genome annotation and a temporal dimension of mosquito evolution.	Mol Phylogenet Evol	2006	16473530
Peng et al.	Mitochondrial molecular clocks and the origin of the major Otocephalan clades (Pisces: Teleostei): A new insight.	Gene	2006	16476526
Schwarz et al.	Molecular phylogenetics of the exoneurine allodapine bees reveal an ancient and puzzling dispersal from Africa to Australia.	Syst Biol	2006	16507522
Gelembiuk et al.	Phylogeography and systematics of zebra mussels and related species.	Mol Ecol	2006	16599965
Yesson et al.	Phyloclimatic modeling: combining phylogenetics and bioclimatic modeling.	Syst Biol	2006	17060200
Zhou et al.	Molecular phylogeny and intra- and intercontinental biogeography of Calycanthaceae.	Mol Phylogenet Evol	2006	16495090
Waters et al.	Molecular phylogeny and biogeography of the Tasmanian and New Zealand mudfishes (Salmoniformes: Galaxiidae)	AUSTRALIAN JOURNAL OF ZOOLOGY	2006	None
Vainola et al.	Phylogeography of "glacial relict" Gammaracanthus (Crustacea, Amphipoda) from boreal lakes and the Caspian and White seas	CANADIAN JOURNAL OF FISHERIES AND AQUATIC SCIENCES	2006	None
Wang et al.	Divergence time estimates for the early history of animal phyla and the origin of plants, animals and fungi	PROCEEDINGS OF THE ROYAL SOCIETY OF LONDON SERIES B-BIOLOGICAL SCIENCES	2006	None
Vinnersten et al.	Age and biogeography of major clades in Liliales	AMERICAN JOURNAL OF BOTANY	2006	None
von Hagen et al.	Phylogeny and flower evolution of the Swertiinae (Gentianaceae-Gentianeae): Homoplasy and the principle of variable proportions	SYSTEMATIC BOTANY	2006	None
Wang et al.	Historical biogeography and phylogenetic relationships of the genus Chamaecyparis (Cupressaceae) inferred from chloroplast DNA polymorphism	PLANT SYSTEMATICS AND EVOLUTION	2006	None
Waters et al.	Mitochondrial DNA phylogenetics of the Galaxias vulgaris complex from South Island, New Zealand: rapid radiation of a species flock	JOURNAL OF FISH BIOLOGY	2006	None
Wen et al.	Phylogeny and biogeography of Aralia sect. Aralia (Araliaceae)	AMERICAN JOURNAL OF BOTANY	2006	None
Wang et al.	Phylogenetic position of Ephedra rhytidosperma, a species endemic to China: Evidence from chloroplast and ribosomal DNA sequences	CHINESE SCIENCE BULLETIN	2006	None
Wagstaff et al.	Origin and relationships of the austral genus Abrotanella (Asteraceae) inferred from DNA sequences	TAXON	2006	None
Thomas et al.	Molecular and morphological evidence on the phylogeny of the Elephantidae	PROCEEDINGS OF THE ROYAL SOCIETY OF LONDON SERIES B-BIOLOGICAL SCIENCES	2006	None
Palo et al.	The enigma of the landlocked Baikal and Caspian Seals addressed through phylogeny of phocine mitochondrial sequences	BIOLOGICAL JOURNAL OF THE LINNEAN SOCIETY	2006	None
Guicking et al.	Evolution and phylogeny of the genus Natrix (Serpentes: Colubridae)	Biological Journal of the Linnean Society	2006	None
Li et al.	Molecular phylogenetic analysis of snakeheads (Perciformes: Channidae) using mitochondrial DNA sequences	Ichthyological Research	2006	None
Ruber et al.	Molecular phylogenetics and evolutionary diversification of Labrynth Fishes (Perciformes, Amabantoidei)	Systematic Biology	2006	None
Ribas et al.	Molecular Systematics and patterns of Diversification in Pyrrhura (Psittacidae), with special reference to the Picta-Leucotis complex	The Auk	2006	None
Raterma et al.	Phylogenetic Relationships of the cuscuses and brushtail possums (Marsupiala: Phalangeridae) using the nuclear gene BRCA1	Australian Journal of Zoology	2006	None
Fuchs et al.	An ancient African radiation of corvoid birds (Aves: Passeriformes) detected by mitochondrial and nuclear sequence data	Zoological Scripta	2006	None
Moyle et al.	Phylogeny and Evolutionary History of Old World Suboscine Birds (Aves: Eurylaimides)	American Museum Novitates	2006	None
Drummond et al.	Relaxed phylogenetics and dating with confidence.	PLoS Biol	2006	16683862
Medina et al.	Naked corals: skeleton loss in Scleractinia.	Proc Natl Acad Sci U S A	2006	16754865
Kuraku et al.	Time scale for cyclostome evolution inferred with a phylogenetic diagnosis of hagfish and lamprey cDNA sequences.	Zoolog Sci	2006	17261918
Crowe et al.	Phylogenetics, biogeography and classification of, and character evolution in, gamebirds (Aves : Galliformes): effects of character exclusion,_ data partitioning and missing data	J. Wakeling Cladistics	2006	None
Smith et al.	Testing the molecular clock: molecular and paleontological estimates of divergence times in the Echinoidea (Echinodermata).	Mol Biol Evol	2006	16777927
Van Bocxlaer et al.	Late Cretaceous vicariance in Gondwanan amphibians.	PLoS ONE	2006	17183706
Green et al.	Analysis of one million base pairs of Neanderthal DNA.	Nature	2006	17108958
Savolainen et al.	Sympatric speciation in palms on an oceanic island.	Nature	2006	16467788
Noonan et al.	Sequencing and analysis of Neanderthal genomic DNA.	Science	2006	17110569
Moreau et al.	Phylogeny of the ants: diversification in the age of angiosperms.	Science	2006	16601190
Brady et al.	Evaluating alternative hypotheses for the early evolution and diversification of ants.	Proc Natl Acad Sci U S A	2006	17079492
Good-Avila et al.	Timing and rate of speciation in Agave (Agavaceae).	Proc Natl Acad Sci U S A	2006	16757559
Johnson et al.	The late Miocene radiation of modern Felidae: a genetic assessment.	Science	2006	16400146
Moore et al.	Molecular evidence for the age, origin, and evolutionary history of the American desert plant genus Tiquilia (Boraginaceae).	Mol Phylogenet Evol	2006	16495087
Chakrabarty et al.	Systematics and historical biogeography of Greater Antillean Cichlidae.	Mol Phylogenet Evol	2006	16495088
Sterner et al.	Mitochondrial data support an odd-nosed colobine clade.	Mol Phylogenet Evol	2006	16500120
Bachtrog et al.	Extensive introgression of mitochondrial DNA relative to nuclear genes in the Drosophila yakuba species group.	Evolution	2006	16610321
Peng et al.	Uplift of the Tibetan plateau: evidence from divergence times of glyptosternoid catfishes.	Mol Phylogenet Evol	2006	16364665
Slapeta et al.	Global dispersal and ancient cryptic species in the smallest marine eukaryotes.	Mol Biol Evol	2006	16120798
Eckert et al.	Phylogeny, historical biogeography, and patterns of diversification for Pinus (Pinaceae): phylogenetic tests of fossil-based hypotheses.	Mol Phylogenet Evol	2006	16621612
Nie et al.	Intercontinental biogeography of subfamily Orontioideae (Symplocarpus, Lysichiton, and Orontium) of Araceae in Eastern Asia and North America.	Mol Phylogenet Evol	2006	16621613
Hardman et al.	Molecular phylogeny and a chronology of diversification for "phractocephaline" catfishes (Siluriformes: Pimelodidae) based on mitochondrial DNA and nuclear recombination activating gene 2 sequences.	Mol Phylogenet Evol	2006	16644242
Muellner et al.	The mahogany family "out-of-Africa": divergence time estimation, global biogeographic patterns inferred from plastid rbcL DNA sequences, extant, and fossil distribution of diversity.	Mol Phylogenet Evol	2006	16624592
Kullberg et al.	Housekeeping genes for phylogenetic analysis of eutherian relationships.	Mol Biol Evol	2006	16751257
Zuccon et al.	Nuclear and mitochondrial sequence data reveal the major lineages of starlings, mynas and related taxa.	Mol Phylogenet Evol	2006	16806992
Jakob et al.	A chloroplast genealogy of hordeum (poaceae): Long-term persisting haplotypes, incomplete lineage sorting, regional extinction, and the consequences for phylogenetic inference.	Mol Biol Evol	2006	16754643
Brady et al.	Recent and simultaneous origins of eusociality in halictid bees.	Proc Biol Sci	2006	16769636
Stevens et al.	Proceedings of the SMBE Tri-National Young Investigators' Workshop 2005. Southern hemisphere springtails: could any have survived glaciation of Antarctica?	Mol Biol Evol	2006	16326749
van Ee et al.	Phylogeny and biogeography of Croton alabamensis (Euphorbiaceae), a rare shrub from Texas and Alabama, using DNA sequence and AFLP data.	Mol Ecol	2006	16911197
Sachet et al.	Linking patterns and processes of species diversification in the cone flies Strobilomyia (Diptera: Anthomyiidae).	Mol Phylogenet Evol	2006	16876446
Baxevanis et al.	Molecular phylogenetics and asexuality in the brine shrimp Artemia.	Mol Phylogenet Evol	2006	16753307
Berney et al.	A molecular time-scale for eukaryote evolution recalibrated with the continuous microfossil record.	Proc Biol Sci	2006	16822745
Parmakelis et al.	Evolution of Mesobuthus gibbosus (Brullé, 1832) (Scorpiones: Buthidae) in the northeastern Mediterranean region.	Mol Ecol	2006	16911208
Hershkovitz et al.	Phylogeny of Chaetanthera (Asteraceae: Mutisieae) reveals both ancient and recent origins of the high elevation lineages.	Mol Phylogenet Evol	2006	16854602
Robertson et al.	Mechanisms of speciation and faunal enrichment in Atlantic parrotfishes.	Mol Phylogenet Evol	2006	16759882
Daniels et al.	Evolution of Afrotropical freshwater crab lineages obscured by morphological convergence.	Mol Phylogenet Evol	2006	16621611
Zamora et al.	CONJOINT MITOCHONDRIAL PHYLOGENETIC TREES FOR CANARIES SERINUS SPP. AND GOLDFINCHES CARDUELIS SPP. SHOW SEVERAL SPECIFIC POLYTOMIES	Ardeola	2006	None
Ellingson et al.	Evolution of poecilogony from planktotrophy: cryptic speciation, phylogeography, and larval development in the gastropod genus Alderia.	Evolution	2006	17236422
Day et al.	On the origin of the Synodontis catfish species flock from Lake Tanganyika.	Biol Lett	2006	17148285
Wiens et al.	Rapid diversification, incomplete isolation, and the "speciation clock" in North American salamanders (Genus Plethodon): testing the hybrid swarm hypothesis of rapid radiation.	Evolution	2006	17263119
Bunce et al.	Ancient DNA provides new insights into the evolutionary history of New Zealand's extinct giant eagle.	PLoS biology	2005	15660162
Ho et al.	Time dependency of molecular rate estimates and systematic overestimation of recent divergence times.	Molecular biology and evolution	2005	15814826
San Mauro et al.	Initial diversification of living amphibians predated the breakup of Pangaea.	Am Nat	2005	15795855
Switzer et al.	Ancient co-speciation of simian foamy viruses and primates.	Nature	2005	15772660
Zhang et al.	The complete mitochondrial genome of a tree frog, Polypedates megacephalus (Amphibia: Anura: Rhacophoridae), and a novel gene organization in living amphibians.	Gene	2005	15716017
Poux et al.	Asynchronous colonization of Madagascar by the four endemic clades of primates, tenrecs, carnivores, and rodents as inferred from nuclear genes.	Syst Biol	2005	16243759
Wüster et al.	Snakes across the Strait: trans-Torresian phylogeographic relationships in three genera of Australasian snakes (Serpentes: Elapidae: Acanthophis, Oxyuranus, and Pseudechis).	Mol Phylogenet Evol	2005	15579378
Wüster et al.	Tracing an invasion: landbridges, refugia, and the phylogeography of the Neotropical rattlesnake (Serpentes: Viperidae: Crotalus durissus).	Mol Ecol	2005	15773938
Baker et al.	Reconstructing the tempo and mode of evolution in an extinct clade of birds with ancient DNA: the giant moas of New Zealand.	Proc Natl Acad Sci U S A	2005	15928096
Galewski et al.	Ecomorphological diversification among South American spiny rats (Rodentia; Echimyidae): a phylogenetic and chronological approach.	Mol Phylogenet Evol	2005	15683932
Zhan et al.	Molecular phylogeny of avian genus Syrmaticus based on the mitochondrial cytochrome B gene and control region.	Zoolog Sci	2005	15846051
Fukami-Kobayashi et al.	Genomic evolution of MHC class I region in primates.	Proc Natl Acad Sci U S A	2005	15967992
Janke et al.	Mitogenomic analyses place the gharial (Gavialis gangeticus) on the crocodile tree and provide pre-K/T divergence times for most crocodilians.	J Mol Evol	2005	16211427
Amer et al.	Mitochondrial genome of Pogona vitticepes (Reptilia; Agamidae): control region duplication and the origin of Australasian agamids.	Gene	2005	15716001
Beresford et al.	African endemics span the tree of songbirds (Passeri): molecular systematics of several evolutionary 'enigmas'.	Proc Biol Sci	2005	15888418
Weinstock et al.	Evolution, systematics, and phylogeography of pleistocene horses in the new world: a molecular perspective.	PLoS biology	2005	15974804
Sota et al.	Genetic differentiation of the gobies Gymnogobius castaneus and G. taranetzi in the region surrounding the sea of Japan as inferred from a mitochondrial gene genealogy.	Zoolog Sci	2005	15684588
Poulakakis et al.	Phylogeography of Balkan wall lizard (Podarcis taurica) and its relatives inferred from mitochondrial DNA sequences.	Mol Ecol	2005	15969725
Wu et al.	Molecular phylogenetics and biogeography of Lepus in Eastern Asia based on mitochondrial DNA sequences.	Mol Phylogenet Evol	2005	15990340
Ropiquet et al.	Molecular evidence for the polyphyly of the genus Hemitragus (Mammalia, Bovidae).	Molecular phylogenetics and evolution	2005	15904863
van der Meijden et al.	A previously unrecognized radiation of ranid frogs in Southern Africa revealed by nuclear and mitochondrial DNA sequences.	Mol Phylogenet Evol	2005	15975829
Lalueza-Fox et al.	Molecular dating of caprines using ancient DNA sequences of Myotragus balearicus, an extinct endemic Balearic mammal.	BMC Evol Biol	2005	16332256
Willows-Munro et al.	Utility of nuclear DNA intron markers at lower taxonomic levels: phylogenetic resolution among nine Tragelaphus spp.	Mol Phylogenet Evol	2005	15878131
Bridge et al.	A phylogenetic framework for the terns (Sternini) inferred from mtDNA sequences: implications for taxonomy and plumage evolution.	Mol Phylogenet Evol	2005	15804415
Matsui et al.	Multiple invasions of the Ryukyu Archipelago by Oriental frogs of the subgenus Odorrana with phylogenetic reassessment of the related subgenera of the genus Rana.	Mol Phylogenet Evol	2005	15964212
Steiner et al.	New DNA data from a transthyretin nuclear intron suggest an Oligocene to Miocene diversification of living South America opossums (Marsupialia: Didelphidae).	Mol Phylogenet Evol	2005	15804409
Veyrunes et al.	Molecular phylogeny of the African pygmy mice, subgenus Nannomys (Rodentia, Murinae, Mus): implications for chromosomal evolution.	Mol Phylogenet Evol	2005	15955515
Chevret et al.	Systematics and evolution of the subfamily Gerbillinae (Mammalia, Rodentia, Muridae).	Mol Phylogenet Evol	2005	15878135
Tosi et al.	X-chromosomal window into the evolutionary history of the guenons (Primates: Cercopithecini).	Mol Phylogenet Evol	2005	15904856
Roelants et al.	Archaeobatrachian paraphyly and pangaean diversification of crown-group frogs.	Syst Biol	2005	15805014
Blair et al.	Evolutionary sequence analysis of complete eukaryote genomes.	BMC Bioinformatics	2005	15762985
Vidal et al.	The phylogeny of squamate reptiles (lizards, snakes, and amphisbaenians) inferred from nine nuclear protein-coding genes.	C R Biol	2005	16286089
Zhang et al.	Mitogenomic perspectives on the origin and phylogeny of living amphibians.	Syst Biol	2005	16012106
Smith et al.	Replicate patterns of species richness, historical biogeography, and phylogeny in Holarctic treefrogs.	Evolution Int J Org Evolution	2005	16396184
Eick et al.	A nuclear DNA phylogenetic perspective on the evolution of echolocation and historical biogeography of extant bats (chiroptera).	Mol Biol Evol	2005	15930153
Poulakakis et al.	Phylogenetic relationships and biogeography of Podarcis species from the Balkan Peninsula, by bayesian and maximum likelihood analyses of mitochondrial DNA sequences.	Mol Phylogenet Evol	2005	16039146
Thorpe et al.	Molecular clocks and geological dates: cytochrome b of Anolis extremus substantially contradicts dating of Barbados emergence.	Mol Ecol	2005	15910329
Opazo et al.	A molecular timescale for caviomorph rodents (Mammalia, Hystricognathi).	Mol Phylogenet Evol	2005	16085429
Raaum et al.	Catarrhine primate divergence dates estimated from complete mitochondrial genomes: concordance with fossil and nuclear DNA evidence.	J Hum Evol	2005	15737392
Grau et al.	Molecular phylogenetics and biogeography of Neotropical piping guans (Aves: Galliformes): Pipile Bonaparte, 1856 is synonym of Aburria Reichenbach, 1853.	Mol Phylogenet Evol	2005	15878132
Near et al.	Assessing concordance of fossil calibration points in molecular clock studies: an example using turtles.	Am Nat	2005	15729646
Sasaki et al.	Mitochondrial phylogenetics and evolution of mysticete whales.	Syst Biol	2005	15805012
Colangelo et al.	Mitochondrial phylogeny reveals differential modes of chromosomal evolution in the genus Tatera (Rodentia: Gerbillinae) in Africa.	Mol Phylogenet Evol	2005	15878125
Blair et al.	Molecular phylogeny and divergence times of deuterostome animals.	Mol Biol Evol	2005	16049193
Kumar et al.	Placing confidence limits on the molecular age of the human-chimpanzee divergence.	Proc Natl Acad Sci U S A	2005	16365310
Macey et al.	The complete mitochondrial genome of a gecko and the phylogenetic position of the Middle Eastern Teratoscincus keyserlingii.	Mol Phylogenet Evol	2005	15904865
Takahashi et al.	Very close relationship of the chloroplast genomes among Saccharum species.	Theor Appl Genet	2005	15818464
Maekawa et al.	Phylogeny of endosymbiont bacteria harbored by the woodroach Cryptocercus spp. (Cryptocercidae: Blattaria): molecular clock evidence for a late Cretaceous--early Tertiary split of Asian and American lineages.	Mol Phylogenet Evol	2005	15890537
Morse et al.	Interspecific phylogeography of the Stator limbatus species complex: the geographic context of speciation and specialization.	Mol Phylogenet Evol	2005	15922631
Westneat et al.	Phylogenetic relationships and evolutionary history of the reef fish family Labridae.	Mol Phylogenet Evol	2005	15955516
Allegrucci et al.	Molecular phylogeography of Dolichopoda cave crickets (Orthoptera, Rhaphidophoridae): a scenario suggested by mitochondrial DNA.	Mol Phylogenet Evol	2005	15964214
Foto et al.	A comparison of airborne ergosterol, glucan and Air-O-Cell data in relation to physical assessments of mold damage and some other parameters.	Indoor Air	2005	15982272
Cunha et al.	Patterns of cladogenesis in the venomous marine gastropod genus Conus from the Cape Verde islands.	Syst Biol	2005	16109706
Zerega et al.	Biogeography and divergence times in the mulberry family (Moraceae).	Mol Phylogenet Evol	2005	16112884
Parmakelis et al.	Inference of a radiation in Mastus (Gastropoda, Pulmonata, Enidae) on the island of Crete.	Evolution	2005	16136799
Near et al.	Dispersal, vicariance, and timing of diversification in Nothonotus darters.	Mol Ecol	2005	16156817
Clarkson et al.	Long-term genome diploidization in allopolyploid Nicotiana section Repandae (Solanaceae).	New Phytol	2005	16159337
Takamatsu et al.	Caespitotheca gen. nov., an ancestral genus in the Erysiphales.	Mycol Res	2005	16175792
Bonacum et al.	Phylogeny and age of diversification of the planitibia species group of the Hawaiian Drosophila.	Mol Phylogenet Evol	2005	16182150
Keith et al.	Ubiquity of Sicyopterus lagocephalus (Teleostei: Gobioidei) and phylogeography of the genus Sicyopterus in the Indo-Pacific area inferred from mitochondrial cytochrome b gene.	Mol Phylogenet Evol	2005	16214374
Kergoat et al.	Parallels in the evolution of the two largest New and Old World seed-beetle genera (Coleoptera, Bruchidae).	Mol Ecol	2005	16262855
Domingues et al.	Historical colonization and demography of the Mediterranean damselfish, Chromis chromis.	Mol Ecol	2005	16262858
Magallón et al.	Angiosperm divergence times: the effect of genes, codon positions, and time constraints.	Evolution	2005	16329238
Near et al.	Fossil calibrations and molecular divergence time estimates in centrarchid fishes (Teleostei: Centrarchidae).	Evolution	2005	16329246
Agnese et al.	Insight into the phylogeny of African Clariidae (Teleostei, Siluriformes): implications for their body shape evolution, biogeography, and taxonomy.	Mol Phylogenet Evol	2005	15886025
Morán et al.	Phylogeny and molecular evolution of the Drosophila hydei subgroup (Drosophila repleta group) inferred from the Xanthine dehydrogenase gene.	Mol Phylogenet Evol	2005	15935705
Zhu et al.	Phylogenetic relationships among A-genome species of the genus Oryza revealed by intron sequences of four nuclear genes.	New Phytol	2005	15948847
Sota et al.	Phylogeny and character evolution of endemic Australian carabid beetles of the genus Pamborus based on mitochondrial and nuclear gene sequences.	Mol Phylogenet Evol	2005	15955517
Schneider-Broussard et al.	Tests of phylogeographic models with nuclear and mitochondrial DNA sequence variation in the stone crabs, Menippe adina and Menippe mercenaria	EVOLUTION	2005	None
Spicer et al.	Molecularphylogeny of the Drosophila virilis species group (Diptera : Drosophilidae) inferred from mitochondrial 12S and 16S ribosomal RNA genes	ANNALS OF THE ENTOMOLOGICAL SOCIETY OF AMERICA	2005	None
Sun et al.	Molecular phylogeny of Helleborus (Ranunculaceae), with an emphasis on the East Asian-Mediterranean disjunction	TAXON	2005	None
Whitcher et al.	Phylogeny and biogeography of Corylus (Betulaceae): Inferences from ITS sequences	SYSTEMATIC BOTANY	2005	None
Spicer et al.	Phylogenetic analysis of breeding site use and alpha-amanitin tolerance within the Drosophila quinaria species group	EVOLUTION	2005	None
Spalik et al.	The evolutionary history of Sium sensu lato (Apiaceae): Dispersal, vicariance, and domestication as inferred from ITS rDNA phylogeny	AMERICAN JOURNAL OF BOTANY	2005	None
Sota et al.	Comparative historical biogeography of Plateumaris leaf beetles (Coleoptera: Chrysomelidae) in Japan: interplay between fossil and molecular data	JOURNAL OF BIOGEOGRAPHY	2005	None
Stadelmann et al.	Molecular phylogeny of New World Myotis (Chiroptera, Vespertilionidae) inferred from mitochondrial and nuclear DNA genes	MOLECULAR PHYLOGENETICS AND EVOLUTION	2005	None
Sequeira et al.	Evolutionary origins of Gondwanan interactions: How old are Araucaria beetle herbivores?	BIOLOGICAL JOURNAL OF THE LINNEAN SOCIETY	2005	None
Sheridan et al.	Estimated minimal divergence times of the major bacterial and archaeal phyla	GEOMICROBIOLOGY JOURNAL	2005	None
Taylor et al.	Biogeography of a widespread freshwater crustacean: Pseudocongruence and cryptic endemism in the North American Daphnia laevis complex	EVOLUTION	2005	None
Strugnell et al.	Divergence time estimates for major cephalopod groups: evidence from multiple genes	CLADISTICS	2005	None
Schulte et al.	Molecular phylogenetic evidence for ancient divergence of lizard taxa on either side of Wallace's Line	PROCEEDINGS OF THE ROYAL SOCIETY OF LONDON SERIES B-BIOLOGICAL SCIENCES	2005	None
Voelker et al.	Systematics and historical biogeography of wagtails: Dispersal versus vicariance revisited	CONDOR	2005	None
Pereira et al.	Multiple gene evidence for parallel evolution and retention of ancestral morphological states in the shanks (Charadriiformes: Scolopacidae)	The Condor	2005	None
Amer et al.	Mitochondrial DNA sequences of the Afro-Arabian spiny-tailed lizards (genus Uromastyx; family Agamidae): phylogenetic analyses and evolution of gene arrangements	Biological Journal of the Linnean Society	2005	None
Fyler et al.	Historical Biogeography and phylogeny of monachine seals (Pinnepida: Phocidae) based on mitochondrial and nuclear DNA data	Journal of Biogeography	2005	None
Given et al.	Molecular evidence for recent radiation in Southern Hemisphere masked gulls	The Auk	2005	None
Porter et al.	Model-based multi-locus estimation of decapod phylogeny and divergence times.	Mol Phylogenet Evol	2005	16112880
Dumont et al.	Phylogenetic relationships, divergence time estimation, and global biogeographic patterns of calopterygoid damselflies (odonata, zygoptera) inferred from ribosomal DNA sequences.	Syst Biol	2005	16012103
Wall et al.	Origin and rapid diversification of a tropical moss.	Evolution	2005	16153028
Teeling et al.	A molecular phylogeny for bats illuminates biogeography and the fossil record.	Science	2005	15681385
Inoue et al.	The mitochondrial genome of Indonesian coelacanth Latimeria menadoensis (Sarcopterygii: Coelacanthiformes) and divergence time estimation between the two coelacanths.	Gene	2005	15777665
Jones et al.	Bats, clocks, and rocks: diversification patterns in Chiroptera.	Evolution	2005	16405167
Anderson et al.	Dating phylogenetically basal eudicots using rbcL sequences and multiple fossil reference points	Am. J. Bot	2005	None
Blair et al.	Molecular clocks do not support the Cambrian explosion.	Mol Biol Evol	2005	15537810
Minegishi et al.	Molecular phylogeny and evolution of the freshwater eels genus Anguilla based on the whole mitochondrial genome sequences.	Mol Phylogenet Evol	2005	15579387
Brandstätter et al.	Mitochondrial phylogeny of the Cyprichromini, a lineage of open-water cichlid fishes endemic to Lake Tanganyika, East Africa.	Mol Phylogenet Evol	2005	15619449
Knapp et al.	Relaxed molecular clock provides evidence for long-distance dispersal of Nothofagus (southern beech).	PLoS Biol	2005	15660155
Cantanhede et al.	Phylogeography and population genetics of the endangered Amazonian manatee, Trichechus inunguis Natterer, 1883 (Mammalia, Sirenia).	Mol Ecol	2005	15660933
Regier et al.	Pancrustacean phylogeny: hexapods are terrestrial crustaceans and maxillopods are not monophyletic.	Proc Biol Sci	2005	15734694
Schneider et al.	Origin of the endemic fern genus Diellia coincides with the renewal of Hawaiian terrestrial life in the Miocene.	Proc Biol Sci	2005	15734701
Weeks et al.	The phylogenetic history and biogeography of the frankincense and myrrh family (Burseraceae) based on nuclear and chloroplast sequence data.	Mol Phylogenet Evol	2005	15737584
Barber et al.	Biodiversity hotspots: evolutionary origins of biodiversity in wrasses (Halichoeres: Labridae) in the Indo-Pacific and new world tropics.	Mol Phylogenet Evol	2005	15737594
Xiao et al.	Molecular phylogeny of Sinocyclocheilus (Cypriniformes: Cyprinidae) inferred from mitochondrial DNA sequences.	Mol Phylogenet Evol	2005	15904857
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Cárdenas et al.	Origin, diversification, and historical biogeography of the genus Trachurus (Perciformes: Carangidae).	Mol Phylogenet Evol	2005	15804418
Tremetsberger et al.	Nuclear ribosomal DNA and karyotypes indicate a NW African origin of South American Hypochaeris (Asteraceae, Cichorieae).	Mol Phylogenet Evol	2005	15737585
Emerson et al.	Diversification of the forest beetle genus Tarphius on the Canary Islands, and the evolutionary origins of island endemics.	Evolution	2005	15856701
Chen et al.	Molecular systematics and biogeography of Crawfurdia, Metagentiana and Tripterospermum (Gentianaceae) based on nuclear ribosomal and plastid DNA sequences.	Ann Bot	2005	15994844
Leebens-Mack et al.	Identifying the basal angiosperm node in chloroplast genome phylogenies: sampling one's way out of the Felsenstein zone.	Mol Biol Evol	2005	15944438
Kim et al.	Two chloroplast DNA inversions originated simultaneously during the early evolution of the sunflower family (Asteraceae).	Mol Biol Evol	2005	15917497
Swallow et al.	Genetic divergence does not predict change in ornament expression among populations of stalk-eyed flies.	Mol Ecol	2005	16202096
Van Riel et al.	Molecular systematics of the endemic Leptaxini (Gastropoda: Pulmonata) on the Azores islands.	Mol Phylogenet Evol	2005	16085432
Perdices et al.	Evolutionary history of the synbranchid eels (Teleostei: Synbranchidae) in Central America and the Caribbean islands inferred from their molecular phylogeny.	Mol Phylogenet Evol	2005	16223677
Hughes et al.	Refugia, dispersal and divergence in a forest archipelago: a study of Streptocarpus in eastern South Africa.	Mol Ecol	2005	16313602
Xiang et al.	Phylogeny, biogeography, and molecular dating of cornelian cherries (Cornus, Cornaceae): tracking Tertiary plant migration.	Evolution	2005	16329240
Bolnick et al.	Tempo of hybrid inviability in centrarchid fishes (Teleostei: Centrarchidae).	Evolution	2005	16329245
Bell et al.	The age of the angiosperms: a molecular timescale without a clock.	Evolution	2005	16050101
Linder et al.	Taxon sampling effects in molecular clock dating: an example from the African Restionaceae.	Mol Phylogenet Evol	2005	15878126
Rønsted et al.	60 million years of co-divergence in the fig-wasp symbiosis.	Proc Biol Sci	2005	16321781
Barker et al.	Phylogeny and diversification of the largest avian radiation.	Proc Natl Acad Sci U S A	2004	15263073
Sorenson et al.	Clade-limited colonization in brood parasitic finches (Vidua spp.).	Syst Biol	2004	14965909
Roos et al.	Primate jumping genes elucidate strepsirrhine phylogeny.	Proc Natl Acad Sci U S A	2004	15249661
Luo et al.	Molecular phylogeny and biogeography of Oriental voles: genus Eothenomys (Muridae, Mammalia).	Mol Phylogenet Evol	2004	15336670
Arnason et al.	Mitogenomic analyses provide new insights into cetacean origin and evolution.	Gene	2004	15177677
Douzery et al.	Rabbits, if anything, are likely Glires.	Mol Phylogenet Evol	2004	15522813
Poux et al.	Primate phylogeny, evolutionary rate variations, and divergence times: a contribution from the nuclear gene IRBP.	Am J Phys Anthropol	2004	15085543
Hassanin et al.	Molecular phylogeny of the tribe Bovini (Bovidae, Bovinae) and the taxonomic status of the Kouprey, Bos sauveli Urbain 1937.	Mol Phylogenet Evol	2004	15522811
Chippindale et al.	Phylogenetic evidence for a major reversal of life-history evolution in plethodontid salamanders.	Evolution; international journal of organic evolution	2004	15696758
Westerman et al.	Molecular phylogenetic relationships of two extinct potoroid marsupials, Potorous platyops and Caloprymnus campestris (Potoroinae: Marsupialia).	Mol Phylogenet Evol	2004	15062789
Nilsson et al.	Marsupial relationships and a timeline for marsupial radiation in South Gondwana.	Gene	2004	15475160
Fromhage et al.	Testing alternative vicariance scenarios in Western Mediterranean discoglossid frogs.	Mol Phylogenet Evol	2004	15019627
Matthee et al.	A molecular supermatrix of the rabbits and hares (Leporidae) allows for the identification of five intercontinental exchanges during the Miocene.	Syst Biol	2004	15503672
Hugall et al.	Molecular claims of Gondwanan age for Australian agamid lizards are untenable.	Mol Biol Evol	2004	15297599
Chippindale et al.	Phylogenetic evidence for a major reversal of life-history evolution in plethodontid salamanders.	Evolution; international journal of organic evolution	2004	15693029
Harrison et al.	Four new avian mitochondrial genomes help get to basic evolutionary questions in the late cretaceous.	Mol Biol Evol	2004	14739240
Seo et al.	Estimating absolute rates of synonymous and nonsynonymous nucleotide substitution in order to characterize natural selection and date species divergences.	Mol Biol Evol	2004	15014159
Evans et al.	A mitochondrial DNA phylogeny of African clawed frogs: phylogeography and implications for polyploid evolution.	Mol Phylogenet Evol	2004	15324848
Yoder et al.	Divergence dates for Malagasy lemurs estimated from multiple gene loci: geological and evolutionary context.	Mol Ecol	2004	15012754
Delsuc et al.	Influence of Tertiary paleoenvironmental changes on the diversification of South American mammals: a relaxed molecular clock study within xenarthrans.	BMC Evol Biol	2004	15115541
Matthee et al.	A phylogenetic review of the African leaf chameleons: genus Rhampholeon (Chamaeleonidae): the role of vicariance and climate change in speciation.	Proc Biol Sci	2004	15347522
Douzery et al.	The timing of eukaryotic evolution: does a relaxed molecular clock reconcile proteins and fossils?	Proc Natl Acad Sci U S A	2004	15494441
Steiper et al.	Genomic data support the hominoid slowdown and an Early Oligocene estimate for the hominoid-cercopithecoid divergence.	Proc Natl Acad Sci U S A	2004	15572456
Steppan et al.	Phylogeny and divergence-date estimates of rapid radiations in muroid rodents based on multiple nuclear genes.	Syst Biol	2004	15371245
Liu et al.	Molecular phylogeny and taxonomy of wood mice (genus Apodemus Kaup, 1829) based on complete mtDNA cytochrome b sequences, with emphasis on Chinese species.	Mol Phylogenet Evol	2004	15324834
Roelants et al.	Endemic ranid (Amphibia: Anura) genera in southern mountain ranges of the Indian subcontinent represent ancient frog lineages: evidence from molecular data.	Mol Phylogenet Evol	2004	15062806
Roca et al.	Mesozoic origin for West Indian insectivores.	Nature	2004	15190349
Durand et al.	Insight into the origin of endemic Mediterranean ichthyofauna: phylogeography of Chondrostoma genus (Teleostei, Cyprinidae).	J Hered	2004	12920103
Cibois et al.	Biogeography of eastern Polynesian monarchs (Pomarea): an endemic genus close to extinction	The Condor	2004	None
van Tuinen et al.	Calibration of galliform molecular clocks using multiple fossils and genetic partitions.	Mol Phylogenet Evol	2004	15022759
Schneider et al.	Ferns diversified in the shadow of angiosperms.	Nature	2004	15058303
Peterson et al.	Estimating metazoan divergence times with a molecular clock.	Proc Natl Acad Sci U S A	2004	15084738
Brochu et al.	Calibration age and quartet divergence date estimation.	Evolution	2004	15266985
Bremer et al.	Molecular phylogenetic dating of asterid flowering plants shows early Cretaceous diversification.	Syst Biol	2004	15503676
Battistuzzi et al.	A genomic timescale of prokaryote evolution: insights into the origin of methanogenesis, phototrophy, and the colonization of land.	BMC Evol Biol	2004	15535883
Waggoner et al.	REDUCTIO AD ABSURDUM: TESTING THE EVOLUTIONARY RELATIONSHIPS OF EDIACARAN AND PALEOZOIC PROBLEMATIC FOSSILS USING MOLECULAR DIVERGENCE DATES	J. Paleontol.	2004	None
Eizirik et al.	Molecular Phylogeny and Dating of Early Primate Divergences	Anthropoid Origins: New Visions	2004	None
Janssen et al.	The age of major monocot groups inferred from 800 plus rbcL sequences	Bot. J. Linn. Soc	2004	None
Near et al.	Estimating divergence times of notothenioid fishes using a fossil-calibrated molecular clock	Antarctic Sci.	2004	None
Pryer et al.	Phylogeny and evolution of ferns (monilophytes) with a focus on the early leptosporangiate divergences	American Journal of Botany	2004	None
Hedges et al.	A molecular timescale of eukaryote evolution and the rise of complex multicellular life.	BMC Evol Biol	2004	15005799
Bellwood et al.	Evolution and biogeography of marine angelfishes (Pisces: Pomacanthidae).	Mol Phylogenet Evol	2004	15324844
Blattner et al.	Phylogenetic analysis of Hordeum (Poaceae) as inferred by nuclear rDNA ITS sequences.	Mol Phylogenet Evol	2004	15336664
Burridge et al.	Molecular phylogeny of the Cheilodactylidae and Latridae (Perciformes: Cirrhitoidea) with notes on taxonomy and biogeography.	Mol Phylogenet Evol	2004	15022763
Cibois et al.	Assessing the passerine "Tapestry": phylogenetic relationships of the Muscicapoidea inferred from nuclear DNA sequences.	Mol Phylogenet Evol	2004	15186812
Gómez-Zurita et al.	Molecular systematics and time-scale for the evolution of Timarcha, a leaf-beetle genus with a disjunct Holarctic distribution.	Mol Phylogenet Evol	2004	15223044
Hulva et al.	Molecular architecture of Pipistrellus pipistrellus/Pipistrellus pygmaeus complex (Chiroptera: Vespertilionidae): further cryptic species and Mediterranean origin of the divergence.	Mol Phylogenet Evol	2004	15288073
Huyse et al.	Paleoclimatic history and vicariant speciation in the "sand goby" group (Gobiidae, Teleostei).	Mol Phylogenet Evol	2004	15186817
Klanten et al.	Patterns of lineage diversification in the genus Naso (Acanthuridae).	Mol Phylogenet Evol	2004	15186809
Cho et al.	Mitochondrial substitution rates are extraordinarily elevated and variable in a genus of flowering plants.	Proc Natl Acad Sci U S A	2004	15598738
Darling et al.	Molecular evidence links cryptic diversification in polar planktonic protists to Quaternary climate dynamics.	Proc Natl Acad Sci U S A	2004	15136732
Davies et al.	Darwin's abominable mystery: Insights from a supertree of the angiosperms.	Proc Natl Acad Sci U S A	2004	14766971
Austin et al.	Reconstructing an island radiation using ancient and recent DNA: the extinct and living day geckos (Phelsuma) of the Mascarene islands.	Mol Phylogenet Evol	2004	15019612
Balke et al.	MtDNA phylogeny and biogeography of Copelatinae, a highly diverse group of tropical diving beetles (Dytiscidae).	Mol Phylogenet Evol	2004	15288062
Groombridge et al.	Molecular phylogeny and morphological change in the Psittacula parakeets.	Mol Phylogenet Evol	2004	15019611
Darrin Hulsey et al.	Temporal diversification of Mesoamerican cichlid fishes across a major biogeographic boundary.	Mol Phylogenet Evol	2004	15062808
Tamura et al.	Temporal patterns of fruit fly (Drosophila) evolution revealed by mutation clocks.	Mol Biol Evol	2004	12949132
Kotlík et al.	Circum Black Sea phylogeography of Barbus freshwater fishes: divergence in the Pontic glacial refugium.	Mol Ecol	2004	14653791
Park et al.	Molecular phylogeny and biogeography of the Korean woodroaches Cryptocercus spp.	Mol Phylogenet Evol	2004	14715235
Faulkes et al.	Phylogeographical patterns of genetic divergence and speciation in African mole-rats (Family: Bathyergidae).	Mol Ecol	2004	14871365
Yoon et al.	A molecular timeline for the origin of photosynthetic eukaryotes.	Mol Biol Evol	2004	14963099
Plana et al.	Pleistocene and pre-Pleistocene Begonia speciation in Africa.	Mol Phylogenet Evol	2004	15062787
Megens et al.	Tempo of speciation in a butterfly genus from the Southeast Asian tropics, inferred from mitochondrial and nuclear DNA sequence data.	Mol Phylogenet Evol	2004	15120408
Mabuchi et al.	Molecular phylogeny of the antitropical genus Pseudolabrus (Perciformes: Labridae): evidence for a Southern Hemisphere origin.	Mol Phylogenet Evol	2004	15186821
Ponniah et al.	The evolution of Queensland spiny mountain crayfish of the genus Euastacus. I. Testing vicariance and dispersal with interspecific mitochondrial DNA.	Evolution	2004	15212388
Mansion et al.	Generic delimitation and phylogenetic relationships within the subtribe Chironiinae (Chironieae: Gentianaceae), with special reference to Centaurium: evidence from nrDNA and cpDNA sequences.	Mol Phylogenet Evol	2004	15288069
Milne et al.	Phylogeny and biogeography of Rhododendron subsection Pontica, a group with a tertiary relict distribution.	Mol Phylogenet Evol	2004	15336673
Weir et al.	Ice sheets promote speciation in boreal birds.	Proc Biol Sci	2004	15347509
Rüber et al.	Evolutionary and biogeographic patterns of the Badidae (Teleostei: Perciformes) inferred from mitochondrial and nuclear DNA sequence data.	Mol Phylogenet Evol	2004	15354300
Moyle et al.	Calibration of molecular clocks and the biogeographic history of Crypteroniaceae.	Evolution	2004	15446441
Yu et al.	Molecular phylogeny and biogeography of woolly flying squirrel (Rodentia: Sciuridae), inferred from mitochondrial cytochrome b gene sequences.	Mol Phylogenet Evol	2004	15522800
Yi et al.	Phylogenetic and biogeographic diversification of Rhus (Anacardiaceae) in the Northern Hemisphere.	Mol Phylogenet Evol	2004	15522809
Pitra et al.	Evolution and phylogeny of old world deer.	Mol Phylogenet Evol	2004	15522810
Williams et al.	Speciation and diversity on tropical rocky shores: a global phylogeny of snails of the genus Echinolittorina.	Evolution	2004	15562687
Near et al.	Rapid allopatric speciation in logperch darters (Percidae: Percina).	Evolution	2004	15696757
Ribera et al.	Phylogeny and historical biogeography of Agabinae diving beetles (Coleoptera) inferred from mitochondrial DNA sequences.	Mol Phylogenet Evol	2004	15012938
Adkins et al.	Higher-level systematics of rodents and divergence time estimates based on two congruent nuclear genes.	Mol Phylogenet Evol	2003	12644400
Douady et al.	The Sahara as a vicariant agent, and the role of Miocene climatic events, in the diversification of the mammalian order Macroscelidea (elephant shrews).	Proc Natl Acad Sci U S A	2003	12821774
Yoder et al.	Single origin of Malagasy Carnivora from an African ancestor.	Nature	2003	12610623
Biju et al.	New frog family from India reveals an ancient biogeographical link with the Seychelles.	Nature	2003	14562102
Paton et al.	RAG-1 sequences resolve phylogenetic relationships within Charadriiform birds.	Mol Phylogenet Evol	2003	13678682
Teeling et al.	Nuclear gene sequences confirm an ancient link between New Zealand's short-tailed bat and South American noctilionoid bats.	Mol Phylogenet Evol	2003	12878467
Douady et al.	Molecular estimation of eulipotyphlan divergence times and the evolution of "Insectivora".	Mol Phylogenet Evol	2003	12878465
Warren et al.	Molecular phylogeography reveals island colonization history and diversification of western Indian Ocean sunbirds (Nectarinia: Nectariniidae).	Mol Phylogenet Evol	2003	12967608
Hassanin et al.	Molecular and morphological phylogenies of ruminantia and the alternative position of the moschidae.	Systematic biology	2003	12746147
Douzery et al.	Local molecular clocks in three nuclear genes: divergence times for rodents and other mammals and incompatibility among fossil calibrations.	J Mol Evol	2003	15008417
Nilsson et al.	Radiation of extant marsupials after the K/T boundary: evidence from complete mitochondrial genomes.	J Mol Evol	2003	15008398
Wildman et al.	Implications of natural selection in shaping 99.4% nonsynonymous DNA identity between humans and chimpanzees: enlarging genus Homo.	Proc Natl Acad Sci U S A	2003	12766228
Yang et al.	Comparison of likelihood and Bayesian methods for estimating divergence times using multiple gene Loci and calibration points, with application to a radiation of cute-looking mouse lemur species.	Syst Biol	2003	14530137
Woodburne et al.	The evolution of tribospheny and the antiquity of mammalian clades.	Mol Phylogenet Evol	2003	12878472
Springer et al.	Placental mammal diversification and the Cretaceous-Tertiary boundary.	Proc Natl Acad Sci U S A	2003	12552136
Nei et al.	The Wilhelmine E. Key 2001 Invitational Lecture. Estimation of divergence times for a few mammalian and several primate species.	J Hered	2003	12195029
Schrago et al.	Timing the origin of New World monkeys.	Mol Biol Evol	2003	12832653
Hasegawa et al.	Time scale of eutherian evolution estimated without assuming a constant rate of molecular evolution.	Genes Genet Syst	2003	14532706
De Giorgi et al.	Structural and evolutionary analysis of the ribosomal genes of the parasitic nematode Meloidogyne artiellia suggests its ancient origin.	Mol Biochem Parasitol	2003	12387855
Ribera et al.	Mitochondrial DNA phylogeography and population history of Meladema diving beetles on the Atlantic Islands and in the Mediterranean basin (Coleoptera, Dytiscidae).	Mol Ecol	2003	12492885
Jordan et al.	Molecular systematics and adaptive radiation of Hawaii's endemic Damselfly genus Megalagrion (Odonata: Coenagrionidae).	Syst Biol	2003	12554443
Hausdorf et al.	Relationships and origin of endemic Lake Baikal gastropods (Caenogastropoda: Rissooidea) based on mitochondrial DNA sequences.	Mol Phylogenet Evol	2003	12644402
Huang et al.	Estimation of the age of extant Ephedra using chloroplast rbcL sequence data.	Mol Biol Evol	2003	12644564
Maekawa et al.	Biogeography of Japanese wood-feeding cockroaches genus Salganea and Panesthia (Blaberidae: Panesthiinae).	Mol Phylogenet Evol	2003	12679080
John et al.	The application of a molecular clock based on molecular sequences and the fossil record to explain biogeographic distributions within the Alexandrium tamarense "species complex" (Dinophyceae).	Mol Biol Evol	2003	12716990
Lo et al.	Evidence for cocladogenesis between diverse dictyopteran lineages and their intracellular endosymbionts.	Mol Biol Evol	2003	12716997
Slapeta et al.	Evolutionary relationships among cyst-forming coccidia Sarcocystis spp. (Alveolata: Apicomplexa: Coccidea) in endemic African tree vipers and perspective for evolution of heteroxenous life cycle.	Mol Phylogenet Evol	2003	12742751
Brady et al.	Evolution of the army ant syndrome: the origin and long-term evolutionary stasis of a complex of behavioral and reproductive adaptations.	Proc Natl Acad Sci U S A	2003	12750466
Otsuka et al.	Advanced formulation of base pair changes in the stem regions of ribosomal RNAs; its application to mitochondrial rRNAs for resolving the phylogeny of animals.	J Theor Biol	2003	12781743
Williams et al.	A molecular phylogeny of the Littorininae (Gastropoda: Littorinidae): unequal evolutionary rates, morphological parallelism, and biogeography of the Southern Ocean.	Mol Phylogenet Evol	2003	12801472
Cheng et al.	Functional antifreeze glycoprotein genes in temperate-water New Zealand nototheniid fish infer an Antarctic evolutionary origin.	Mol Biol Evol	2003	12885956
Salzburger et al.	Phylogeography of the vairone (Leuciscus souffia, Risso 1826) in Central Europe.	Mol Ecol	2003	12919475
Kochzius et al.	Molecular phylogeny of the lionfish genera Dendrochirus and Pterois (Scorpaenidae, Pteroinae) based on mitochondrial DNA sequences.	Mol Phylogenet Evol	2003	12927126
Yuan et al.	Monophyly and relationships of the tribe Exaceae (Gentianaceae) inferred from nuclear ribosomal and chloroplast DNA sequences.	Mol Phylogenet Evol	2003	12927134
Irving et al.	The evolution of enzyme specificity in Fasciola spp.	J Mol Evol	2003	12962301
Hrbek et al.	Closing of the Tethys Sea and the phylogeny of Eurasian killifishes (Cyprinodontiformes: Cyprinodontidae).	J Evol Biol	2003	14635877
Wiegmann et al.	Time flies, a new molecular time-scale for brachyceran fly evolution without a clock.	Syst Biol	2003	14668115
Kato et al.	Phylogenetic analyses of Zostera species based on rbcL and matK nucleotide sequences: implications for the origin and diversification of seagrasses in Japanese waters.	Genes Genet Syst	2003	14676424
Dick et al.	Molecular systematic analysis reveals cryptic tertiary diversification of a widespread tropical rain forest tree.	Am Nat	2003	14737707
Near et al.	Speciation in North American black basses, Micropterus (Actinopterygii: Centrarchidae).	Evolution	2003	12940365
Rest et al.	Molecular systematics of primary reptilian lineages and the tuatara mitochondrial genome.	Mol Phylogenet Evol	2003	13678684
Veith et al.	Palaeoclimatic changes explain Anatolian mountain frog evolution: a test for alternating vicariance and dispersal events.	Mol Ecol	2003	12492887
Vicario et al.	Xantusiid "night" lizards: a puzzling phylogenetic problem revisited using likelihood-based Bayesian methods on mtDNA sequences.	Mol Phylogenet Evol	2003	12565035
Veith et al.	Climatic oscillations triggered post-Messinian speciation of Western Palearctic brown frogs (Amphibia, Ranidae).	Mol Phylogenet Evol	2003	12565039
Mercer et al.	The effects of Cenozoic global change on squirrel phylogeny.	Science	2003	12595609
Glazko et al.	Estimation of divergence times for major lineages of primate species.	Mol Biol Evol	2003	12644563
Sato et al.	Phylogenetic relationships and divergence times among mustelids (Mammalia: Carnivora) based on nucleotide sequences of the nuclear interphotoreceptor retinoid binding protein and mitochondrial cytochrome b genes.	Zoolog Sci	2003	12655187
Tosi et al.	Cercopithecine Y-chromosome data provide a test of competing morphological evolutionary hypotheses.	Mol Phylogenet Evol	2003	12742755
Schulte et al.	Molecular phylogenetic evidence for ancient divergence of lizard taxa on either side of Wallace's Line.	Proc Biol Sci	2003	12769459
Misawa et al.	Revisiting the Glires concept--phylogenetic analysis of nuclear sequences.	Mol Phylogenet Evol	2003	12878468
Orlando et al.	Ancient DNA analysis reveals woolly rhino evolutionary relationships.	Mol Phylogenet Evol	2003	12927133
Sorenson et al.	Speciation by host switch in brood parasitic indigobirds.	Nature	2003	12931185
Jennings et al.	Systematics of the lizard family pygopodidae with implications for the diversification of Australian temperate biotas.	Syst Biol	2003	14668116
Nagy et al.	Multiple colonization of Madagascar and Socotra by colubrid snakes: evidence from nuclear and mitochondrial gene phylogenies.	Proc Biol Sci	2003	14728785
Becerra et al.	Synchronous coadaptation in an ancient case of herbivory.	Proc Natl Acad Sci U S A	2003	14555762
Leys et al.	Evolution of subterranean diving beetles (Coleoptera: Dytiscidae: Hydroporini, Bidessini) in the arid zone of Australia.	Evolution	2003	14761060
Cortés-Ortiz et al.	Molecular systematics and biogeography of the Neotropical monkey genus, Alouatta.	Mol Phylogenet Evol	2003	12470939
Martin et al.	Population variability in Chironomus (Camptochironomus) species (Diptera, Nematocera) with a Holarctic distribution: evidence of mitochondrial gene flow	INSECT MOLECULAR BIOLOGY	2003	None
Murakami et al.	Comparison of sequence of rbcL and non-coding regions of chloroplast DNA and ITS2 region of rDNA in genus Humulus	BREEDING SCIENCE	2003	None
Page et al.	More evidence of speciation and dispersal across the Antarctic Polar Front through molecular systematics of Southern Ocean Limatula (Bivalvia : Limidae)	POLAR BIOLOGY	2003	None
Ribera et al.	Evolution, mitochondrial DNA phylogeny and systematic position of the Macaronesian endemic Hydrotarsus Falkenstrom (Coleoptera : Dytiscidae)	SYSTEMATIC ENTOMOLOGY	2003	None
Ronsted et al.	Phylogenetic relationships within Plantago (Plantaginaceae): evidence from nuclear ribosomal ITS and plastid trnL-F sequence data	BOTANICAL JOURNAL OF THE LINNEAN SOCIETY	2003	None
Sandoval et al.	Molecular phylogenetics of sexual and parthenogenetic Timema walking-sticks	PROCEEDINGS OF THE ROYAL SOCIETY OF LONDON SERIES B-BIOLOGICAL SCIENCES	2003	None
McKay et al.	Phylogeny of Pacific salmon and trout based on growth hormone type-2 and mitochondrial NADH dehydrogenase subunit 3 DNA sequences	CANADIAN JOURNAL OF FISHERIES AND AQUATIC SCIENCES	2003	None
RIDDLE et al.	MOLECULAR BIOGEOGRAPHY IN THE POCKET MICE (PEROGNATHUS AND CHAETODIPUS) AND GRASSHOPPER MICE (ONYCHOMYS) - THE LATE CENOZOIC DEVELOPMENT OF A NORTH-AMERICAN ARIDLANDS RODENT GUILD	JOURNAL OF MAMMALOGY	2003	None
SAWYER et al.	POPULATION-GENETICS OF POLYMORPHISM AND DIVERGENCE	GENETICS	2003	None
Padovan et al.	Fungi Evolution Revisited: Application of the Penalized Likelihood Method to a Bayesian Fungal Phylogeny Provides a New Perspective on Phylogenetic Relationships and Divergence Dates of Ascomycota Groups	JOURNAL OF MOLECULAR EVOLUTION	2003	None
Ribera et al.	Phylogenetic relationships of Dalyat mirabilis Mateu, 2002, with a revised molecular phylogeny of ground beetles (Coleoptera, Carabidae)	JZS	2003	None
Scharaschkin et al.	Phylogeny and historical biogeography of Anaxagorea (Annonaceae) using morphology and non-coding chloroplast sequence data	SYSTEMATIC BOTANY	2003	None
Robles et al.	Molecular phylogeny of the American Callinectes Stimpson, 1860 (Brachyura: Portunidae), based on two partial mitochondrial genes	MARINE BIOLOGY	2003	None
Osborne et al.	Molecular relationships of the cuscuses, brushtail and scaly-tailed possums (Phalangerinae)	AUSTRALIAN JOURNAL OF ZOOLOGY	2003	None
Ruber et al.	Rapid speciation and ecological divergence in the American seven-spined gobies (Gobiidae, Gobiosomatini) inferred from a molecular phylogeny	EVOLUTION	2003	None
Nakano et al.	WORLDWIDE PHYLOGEOGRAPHY OF LIMPETS OF THE ORDER PATELLOGASTROPODA: MOLECULAR, MORPHOLOGICAL AND PALAEONTOLOGICAL EVIDENCE	JOURNAL OF MOLLUSCAN STUDIES	2003	None
Michaux et al.	Phylogeny of the genus Apodemus with a special emphasis on the subgenus Sylvaemus using the nuclear IRBP gene and two mitochondrial markers: cytochrome b and 12S rRNA	MOLECULAR PHYLOGENETICS AND EVOLUTION	2003	None
Vences et al.	Multiple overseas dispersal in amphibians.	Proc Biol Sci	2003	14667332
Paun et al.	Phylogenetic relationships and biogeography of Ranunculus and allied genera (Ranunculaceae) in the Mediterranean region and in the European Alpine System	TAXON	2003	None
Nahum et al.	Diversification of Ramphastinae (Aves, Ramphastidae) prior to the Cretaceous/Tertiary boundary as shown by molecular clock of mtDNA sequences	Genetics and Molecular Biology	2003	None
Saez et al.	Pseudo-cryptic speciation in coccolithophores.	Proc Natl Acad Sci U S A	2003	12759476
Lee et al.	Molecular phylogenies and divergence times of sea urchin species of Strongylocentrotidae, Echinoida.	Mol Biol Evol	2003	12777524
Honeycutt et al.	Molecular systematics of the South American caviomorph rodents: relationships among species and genera in the family Octodontidae.	Mol Phylogenet Evol	2003	12644405
Averdam et al.	Subunit sequences of the 4 x 6-mer hemocyanin from the golden orb-web spider, Nephila inaurata.	Eur J Biochem	2003	12899700
Belov et al.	Immunoglobulin genetics of Ornithorhynchus anatinus (platypus) and Tachyglossus aculeatus (short-beaked echidna).	Comp Biochem Physiol A Mol Integr Physiol	2003	14667846
Montgelard et al.	Molecular systematics of dormice (Rodentia: Gliridae) and the radiation of Graphiurus in Africa.	Proc Biol Sci	2003	14561309
Brant et al.	Molecular phylogeny of short-tailed shrews, Blarina (Insectivora: Soricidae).	Mol Phylogenet Evol	2002	11820838
Douady et al.	Molecular evidence for the monophyly of tenrecidae (mammalia) and the timing of the colonization of Madagascar by Malagasy Tenrecs.	Mol Phylogenet Evol	2002	11884160
Paton et al.	Complete mitochondrial DNA genome sequences show that modern birds are not descended from transitional shorebirds.	Proc Biol Sci	2002	11958716
Dimcheff et al.	Phylogeny of Tetraoninae and other galliform birds using mitochondrial 12S and ND2 genes.	Mol Phylogenet Evol	2002	12144757
Arnason et al.	Mitogenomic analyses of eutherian relationships.	Cytogenet Genome Res	2002	12438776
Pereira et al.	Combined nuclear and mitochondrial DNA sequences resolve generic relationships within the Cracidae (Galliformes, Aves).	Syst Biol	2002	12554460
Huchon et al.	Rodent phylogeny and a timescale for the evolution of Glires: evidence from an extensive taxon sampling using three nuclear genes.	Mol Biol Evol	2002	12082125
Verneau et al.	A view of early vertebrate evolution inferred from the phylogeny of polystome parasites (Monogenea: Polystomatidae).	Proc Biol Sci	2002	11886648
Malcomber et al.	Phylogeny of Gaertnera Lam. (Rubiaceae) based on multiple DNA markers: evidence of a rapid radiation in a widespread, morphologically diverse genus.	Evolution	2002	11913666
Chapco et al.	A molecular phylogenetic study of two relict species of melanopline grasshoppers.	Genome	2002	11962628
Davis et al.	Laurasian migration explains Gondwanan disjunctions: evidence from Malpighiaceae.	Proc Natl Acad Sci U S A	2002	11983870
von Dohlen et al.	Phylogenetics and evolution of the eastern Asian-eastern North American disjunct aphid tribe, Hormaphidini (Hemiptera: Aphididae).	Mol Phylogenet Evol	2002	12069555
Liu et al.	Molecular phylogeny and biogeography of the Qinghai-Tibet Plateau endemic Nannoglottis (Asteraceae).	Mol Phylogenet Evol	2002	12099790
Renner et al.	Repeated evolution of dioecy from monoecy in Siparunaceae (Laurales).	Syst Biol	2002	12116940
Britton et al.	Phylogenetic dating with confidence intervals using mean path lengths.	Mol Phylogenet Evol	2002	12128028
McCafferty et al.	Historical biogeography and molecular systematics of the Indo-Pacific genus Dascyllus (Teleostei: Pomacentridae).	Mol Ecol	2002	12144659
Bremer et al.	Gondwanan evolution of the grass alliance of families (Poales).	Evolution	2002	12206239
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Soto-Adames et al.	Molecular phylogeny of the Puerto Rican Lepidocyrtus and Pseudosinella (Hexapoda: Collembola), a validation of Yoshii's "color pattern species".	Mol Phylogenet Evol	2002	12383748
Aris-Brosou et al.	Effects of models of rate evolution on estimation of divergence dates with special reference to the metazoan 18S ribosomal RNA phylogeny.	Syst Biol	2002	12396585
Marko et al.	Fossil calibration of molecular clocks and the divergence times of geminate species pairs separated by the isthmus of panama.	Mol Biol Evol	2002	12411609
Goldblatt et al.	Radiation in the Cape flora and the phylogeny of peacock irises Moraea (Iridaceae) based on four plastid DNA regions.	Mol Phylogenet Evol	2002	12414315
Conti et al.	Early Tertiary out-of-India dispersal of Crypteroniaceae: evidence from phylogeny and molecular dating.	Evolution	2002	12449480
Hanel et al.	Phylogenetic relationships, evolution of broodcare behavior, and geographic speciation in the wrasse tribe Labrini.	J Mol Evol	2002	12486536
Kano et al.	Major adaptive radiation in neritopsine gastropods estimated from 28S rRNA sequences and fossil records.	Proc Biol Sci	2002	12495489
Davis et al.	Phylogeny of Acridocarpus-Brachylophon (Malpighiaceae): implications for tertiary tropical floras and Afroasian biogeography.	Evolution	2002	12583580
Janke et al.	Phylogenetic analysis of 18S rRNA and the mitochondrial genomes of the wombat, Vombatus ursinus, and the spiny anteater, Tachyglossus aculeatus: increased support for the Marsupionta hypothesis.	J Mol Evol	2002	11734900
Stone et al.	High levels of Y-chromosome nucleotide diversity in the genus Pan.	Proc Natl Acad Sci U S A	2002	11756656
Montgelard et al.	Molecular systematics of sciurognathi (rodentia): the mitochondrial cytochrome b and 12S rRNA genes support the Anomaluroidea (Pedetidae and Anomaluridae).	Mol Phylogenet Evol	2002	11820843
Carranza et al.	Relationships and evolution of the North African geckos, Geckonia and Tarentola (Reptilia: Gekkonidae), based on mitochondrial and nuclear DNA sequences.	Mol Phylogenet Evol	2002	12069554
Wilkinson et al.	Phylogenetic relationships of Indian caecilians (Amphibia: Gymnophiona) inferred from mitochondrial rRNA gene sequences.	Mol Phylogenet Evol	2002	12099794
Lecompte et al.	Cytochrome b-based phylogeny of the Praomys group (Rodentia, Murinae): a new African radiation?	C R Biol	2002	12360851
Eduardo Palma et al.	Phylogenetic and biogeographic relationships of the mouse opossum Thylamys (Didelphimorphia, Didelphidae) in southern South America.	Mol Phylogenet Evol	2002	12414307
Groombridge et al.	A molecular phylogeny of African kestrels with reference to divergence across the Indian Ocean.	Mol Phylogenet Evol	2002	12414309
Kiefer et al.	Conflicting molecular phylogenies of European long-eared bats (Plecotus) can be explained by cryptic diversity.	Mol Phylogenet Evol	2002	12450759
Després et al.	Speciation in the globeflower fly Chiastocheta spp. (Diptera: Anthomyiidae) in relation to host plant species, biogeography, and morphology.	Mol Phylogenet Evol	2002	11820846
Soltis et al.	Rate heterogeneity among lineages of tracheophytes: integration of molecular and fossil data and evidence for molecular living fossils.	Proc Natl Acad Sci U S A	2002	11917101
Gaunt et al.	An insect molecular clock dates the origin of the insects and accords with palaeontological and biogeographic landmarks.	Mol Biol Evol	2002	11961108
Harada et al.	Phylogenetic relationships of four species of floating gobies (Gymnogobius) as inferred from partial mitochondrial cytochrome b gene sequences	Ichthyological Research	2002	None
Pellmyr et al.	Herbivores and molecular clocks as tools in plant biogeography	BIOLOGICAL JOURNAL OF THE LINNEAN SOCIETY	2002	None
Pellmyr et al.	Pollinator divergence within an obligate mutualism: Two Yucca moth species (Lepidoptera; Prodoxidae : Tegeticula) on the Joshua tree (Yucca brevifolia; Agavaceae)	ANNALS OF THE ENTOMOLOGICAL SOCIETY OF AMERICA	2002	None
Pouyaud et al.	A new species of Coelacanth	COMPTES RENDUS DE L ACADEMIE DES SCIENCES SERIE III-SCIENCES DE LA VIE-LIFE SCIENCES	2002	None
Quinteiro et al.	Phylogeny and biogeographic history of hake (genus Merluccius), inferred from mitochondrial DNA control-region sequences	MARINE BIOLOGY	2002	None
Richardson et al.	Phylogenetic analysis of Phylica L. (Rhamnaceae) with an emphasis on island species: evidence from plastid trnL-F and nuclear internal transcribed spacer (ribosomal) DNA sequences	TAXON	2002	None
Schnabel et al.	Cladistic biogeography of Gleditsia (Leguminosae) based on ndhF and rpl16 chloroplast gene sequences	AMERICAN JOURNAL OF BOTANY	2002	None
Pitra et al.	Molecular phylogeny of the tribe Bovini (Mammalia: Artiodactyla): alternative placement of the Anoa	JOURNAL OF EVOLUTIONARY BIOLOGY	2002	None
Porter et al.	Phylogeny and evolution of selected primates as determined by sequences of the epsilon-globin locus and 5' flanking regions	INTERNATIONAL JOURNAL OF PRIMATOLOGY	2002	None
Sanderson et al.	A nonparametric approach to estimating divergence times in the absence of rate constancy	MOLECULAR BIOLOGY AND EVOLUTION	2002	None
Pirie et al.	'Andean-centred' genera in the short-branch clade of Annonaceae: testing biogeographical hypotheses using phylogeny reconstruction and molecular dating	JOURNAL OF BIOGEOGRAPHY	2002	None
Morris et al.	Phylogeny and divergence time estimation in Illicium with implications for New World biogeography	SYSTEMATIC BOTANY	2002	None
Mazurok et al.	Comparative chromosome and mitochondrial DNA analyses and phylogenetic relationships within common votes (Microtus, Arvicolidae)	CHROMOSOME RESEARCH	2002	None
Barraclough et al.	Recent diversification rates in North American tiger beetles estimated from a dated mtDNA phylogenetic tree	MOLECULAR BIOLOGY AND EVOLUTION	2002	12270897
Sanderson et al.	Molecular data from 27 proteins do not support a Precambrian origin of land plants	AMERICAN JOURNAL OF BOTANY	2002	None
Oberorieler et al.	Temporal and spatial diversification of Circum-Mediterranean Compositae-Anthemideae	TAXON	2002	None
Ruber et al.	Molecular phylogenetics and evolutionary diversification of labyrinth fishes (Perciformes : Anabantoidei)	SYSTEMATIC BIOLOGY	2002	None
Martens et al.	Molecular and morphological phylogeny of the ancient asexual Darwinulidae (Crustacea, Ostracoda)	HYDROBIOLOGIA	2002	None
Shapiro et al.	Flight of the dodo.	Science	2002	11872833
Kasuga et al.	Estimation of nucleotide substitution rates in Eurotiomycete fungi.	Mol Biol Evol	2002	12446823
Bossuyt et al.	Amphibians as indicators of early tertiary "out-of-India" dispersal of vertebrates.	Science	2001	11292870
Roca et al.	Genetic evidence for two species of elephant in Africa.	science	2001	11520983
Nikaido et al.	Retroposon analysis of major cetacean lineages: the monophyly of toothed whales and the paraphyly of river dolphins.	Proc Natl Acad Sci U S A	2001	11416211
Haddrath et al.	Complete mitochondrial DNA genome sequences of extinct birds: ratite phylogenetics and the vicariance biogeography hypothesis.	Proc Biol Sci	2001	11370967
Lucchini et al.	Historical biogeography and a mitochondrial DNA phylogeny of grouse and ptarmigan.	Mol Phylogenet Evol	2001	11421655
Quérouil et al.	Phylogeny and evolution of African shrews (Mammalia: Soricidae) inferred from 16s rRNA sequences.	Mol Phylogenet Evol	2001	11476628
Delsuc et al.	The evolution of armadillos, anteaters and sloths depicted by nuclear and mitochondrial phylogenies: implications for the status of the enigmatic fossil Eurotamandua.	Proc Biol Sci	2001	11487408
Nikaido et al.	Maximum likelihood analysis of the complete mitochondrial genomes of eutherians and a reevaluation of the phylogeny of bats and insectivores.	J Mol Evol	2001	11675611
Stauffer et al.	Human and ape molecular clocks and constraints on paleontological hypotheses.	J Hered	2001	11948213
Chen et al.	Genomic divergences between humans and other hominoids and the effective population size of the common ancestor of humans and chimpanzees.	Am J Hum Genet	2001	11170892
Nei et al.	Estimation of divergence times from multiprotein sequences for a few mammalian species and several distantly related organisms.	Proc Natl Acad Sci U S A	2001	11226267
Adkins et al.	Molecular phylogeny and divergence time estimates for major rodent groups: evidence from multiple genes.	Mol Biol Evol	2001	11319262
van Tuinen et al.	Calibration of avian molecular clocks.	Mol Biol Evol	2001	11158379
Bonvicino et al.	Molecular phylogenetics of howler monkeys (Alouatta, Platyrrhini). A comparison with karyotypic data.	Chromosoma	2001	11513299
Burmester et al.	Molecular evolution of the arthropod hemocyanin superfamily.	Mol Biol Evol	2001	11158377
Wares et al.	Patterns of speciation inferred from mitochondrial DNA in North American Chthamalus (Cirripedia: Balanomorpha: Chthamaloidea).	Mol Phylogenet Evol	2001	11161747
Hedin et al.	Molecular insights into species phylogeny, biogeography, and morphological stasis in the ancient spider genus Hypochilus (Araneae: Hypochilidae).	Mol Phylogenet Evol	2001	11161759
Machordom et al.	Evidence of a cenozoic Betic-Kabilian connection based on freshwater fish phylogeography (Luciobarbus, Cyprinidae).	Mol Phylogenet Evol	2001	11161760
Koch et al.	Molecular systematics of the Brassicaceae: evidence from coding plastidic matK and nuclear Chs sequences.	Am J Bot	2001	11250830
Mantovani et al.	The mitochondrial cytochrome oxidase II gene in Bacillus stick insects: ancestry of hybrids, androgenesis, and phylogenetic relationships.	Mol Phylogenet Evol	2001	11286500
Machado et al.	Phylogenetic relationships, historical biogeography and character evolution of fig-pollinating wasps.	Proc Biol Sci	2001	11321056
Wikström et al.	Evolution of Lycopodiaceae (Lycopsida): estimating divergence times from rbcL gene sequences by use of nonparametric rate smoothing.	Mol Phylogenet Evol	2001	11341801
Hoberg et al.	Out of Africa: origins of the Taenia tapeworms in humans.	Proc Biol Sci	2001	11345321
Richardson et al.	Rapid and recent origin of species richness in the Cape flora of South Africa.	Nature	2001	11449273
Lia et al.	Molecular phylogeny of Larrea and its allies (Zygophyllaceae): reticulate evolution and the probable time of creosote bush arrival to North America.	Mol Phylogenet Evol	2001	11697924
Farrell et al.	The evolution of agriculture in beetles (Curculionidae: Scolytinae and Platypodinae).	Evolution	2001	11761062
Mouchaty et al.	Molecular evidence of an African Phiomorpha-South American Caviomorpha clade and support for Hystricognathi based on the complete mitochondrial genome of the cane rat (Thryonomys swinderianus).	Mol Phylogenet Evol	2001	11161749
Cooper et al.	Complete mitochondrial genome sequences of two extinct moas clarify ratite evolution.	Nature	2001	11217857
Weisrock et al.	Molecular phylogenetics and historical biogeography among salamandrids of the "true" salamander clade: rapid branching of numerous highly divergent lineages in Mertensiella luschani associated with the rise of Anatolia.	Mol Phylogenet Evol	2001	11277635
Tougard et al.	Phylogenetic relationships of the five extant Rhinoceros species (Rhinocerotidae, Perissodactyla) based on mitochondrial cytochrome b and 12S rRNA genes.	Mol Phylogenet Evol	2001	11286489
Eizirik et al.	Molecular dating and biogeography of the early placental mammal radiation.	J Hered	2001	11396581
Zhang et al.	Genetic divergence of orangutan subspecies (Pongo pygmaeus).	J Mol Evol	2001	11443355
Salazar-Bravo et al.	Phylogeny and evolution of the neotropical rodent genus Calomys: inferences from mitochondrial DNA sequence data.	Mol Phylogenet Evol	2001	11476627
Paulo et al.	The persistence of Pliocene populations through the Pleistocene climatic cycles: evidence from the phylogeography of an Iberian lizard.	Proc Biol Sci	2001	11487410
Arnaiz-Villena et al.	Phylogeography of crossbills, bullfinches, grosbeaks, and rosefinches.	Cell Mol Life Sci	2001	11529508
Haring et al.	The complete sequence of the mitochondrial genome of Buteo buteo (Aves, Accipitridae) indicates an early split in the phylogeny of raptors.	Mol Biol Evol	2001	11557795
Otsuka et al.	The influence of selection on the evolutionary distance estimated from the base changes observed between homologous nucleotide sequences.	J Theor Biol	2001	11894986
Heckman et al.	Molecular evidence for the early colonization of land by fungi and plants.	Science	2001	11498589
Renner et al.	Melastomeae come full circle: biogeographic reconstruction and molecular clock dating.	Evolution	2001	11525456
Li et al.	Molecular phylogenetic analyses of snakeheads (Perciformes : Channidae) using mitochondrial DNA sequences	ICHTHYOLOGICAL RESEARCH	2001	None
Luchetti et al.	Mitochondrial evolutionary rate and speciation in termites: data on European Reticulitermes taxa (Isoptera, Rhinotermitidae)	INSECTUS SOCIAUX	2001	None
Leys et al.	Molecular phylogeny and historical biogeography of the large carpenter bees, genus Xylocopa (Hymenoptera : Apidae)	BIOLOGICAL JOURNAL OF THE LINNEAN SOCIETY	2001	None
Litzenberger et al.	Molecular phylogeny of selected Eurasian Podismine grasshoppers (Orthoptera : Acrididae)	ANNALS OF THE ENTOMOLOGICAL SOCIETY OF AMERICA	2001	None
Liu et al.	Molecular evidence for the sister relationship of the eastern Asia-North American intercontinental species pair in the Podophyllum group (Berberidaceae)	BOTANICAL BULLETIN OF ACADEMIA SINICA	2001	None
Lopez et al.	Phylogenetic relationships of Diploxylon pines (subgenus Pinus) based on plastid sequence data	INTERNATIONAL JOURNAL OF PLANT SCIENCES	2001	None
Lynch et al.	The age and relationships of the major animal phyla	EVOLUTION	2001	None
Manos et al.	The historical biogeography of Fagaceae: Tracking the tertiary history of temperate and subtropical forests of the Northern Hemisphere	INTERNATIONAL JOURNAL OF PLANT SCIENCES	2001	None
Ito et al.	Phylogeny and phytogeography of Eupatorium (Eupatorieae, Asteraceae): Insights from sequence data of the nrDNA ITS regions and cpDNA RFLP	JOURNAL OF PLANT RESEARCH	2001	None
Jarman et al.	Molecular phylogenetics of circumglobal Euphausia species (Euphausiacea : Crustacea)	CANADIAN JOURNAL OF FISHERIES AND AQUATIC SCIENCES	2001	None
Jarman et al.	DNA evidence for morphological and cryptic Cenozoic speciations in the Anaspididae, 'living fossils' from the Triassic	JOURNAL OF EVOLUTIONARY BIOLOGY	2001	None
Jeong et al.	Molecular phylogeny of the genus Ceanothus (Rhamnaceae) using rbcL and ndhF sequences	THEORETICAL AND APPLIED GENETICS	2001	None
Kitano et al.	Molecular evolutionary analyses of the Rh blood group genes and Rh50 genes in mammals	ZOOLOGICAL STUDIES	2001	None
Knowles et al.	Phylogenetic analysis of montane grasshoppers from western North America (Genus Melanoplus, Acrididae : Melanoplinae)	ANNALS OF THE ENTOMOLOGICAL SOCIETY OF AMERICA	2001	None
Li et al.	Phylogeny and divergence of Chinese Angiopteridaceae based on chloroplast DNA sequence data (rbcL and trnL-F)	CHINESE SCIENCE BULLETIN	2001	None
Li et al.	Echolocation calls, diet, and phylogenetic relationships of stoliczka's trident bat, Aselliscus stoliczkanus (Hipposideridae)	JOURNAL OF MAMMALOGY	2001	None
Koepfli et al.	Phylogenetic relationships of otters (Carnivora : Mustelidae) based on mitochondrial cytochrome b sequences	JOURNAL OF ZOOLOGY	2001	None
Lavin et al.	Identifying tertiary radiations of Fabaceae in the Greater Antilles: Alternatives to cladistic vicariance analysis	INTERNATIONAL JOURNAL OF PLANT SCIENCES	2001	None
Lavin et al.	Phylogeny of robinioid legumes (Fabaceae) revisited: Coursetia and Gliricidia recircumscribed, and a biogeographical appraisal of the Caribbean endemics	SYSTEMATIC BOTANY	2001	None
Li et al.	Paleo-demography of the Drosophila melanogaster subgroup: application of the maximum likelihood method	GENES & GENETIC SYSTEMS	2001	None
Klicka et al.	A cytochrome-b perspective on Passerina bunting relationships	AUK	2001	None
Les et al.	Biogeography of discontinuously distributed hydrophytes: A molecular appraisal of intercontinental disjunctions	INTERNATIONAL JOURNAL OF PLANT SCIENCES	2001	None
Renner et al.	Historical biogeography of Melastomataceae: the roles of Tertiary migration and long-distance dispersal.	Am J Bot	2001	11454629
Janke et al.	The mitochondrial genomes of the iguana (Iguana iguana) and the caiman (Caiman crocodylus): implications for amniote phylogeny.	Proc Biol Sci	2001	11297180
Hedges et al.	Molecular evidence for the early history of living vertebrates	in Major Events in Early Vertebrate Evolution (P. E. Ahlberg Ed.)	2001	None
Huchon et al.	From the Old World to the New World: a molecular chronicle of the phylogeny and biogeography of hystricognath rodents.	Mol Phylogenet Evol	2001	11476632
Hedges et al.	A genomic timescale for the origin of eukaryotes.	BMC Evol Biol	2001	11580860
Lum et al.	Consistency of SINE insertion topology and flanking sequence tree: quantifying relationships among cetartiodactyls.	Mol Biol Evol	2000	11018149
Nikaido et al.	Monophyletic origin of the order chiroptera and its phylogenetic position among mammalia, as inferred from the complete sequence of the mitochondrial DNA of a Japanese megabat, the Ryukyu flying fox (Pteropus dasymallus).	J Mol Evol	2000	11040283
Yoder et al.	Estimation of primate speciation dates using local molecular clocks.	Mol Biol Evol	2000	10889221
Arnason et al.	Molecular estimates of primate divergences and new hypotheses for primate dispersal and the origin of modern humans.	Hereditas	2000	11433966
Arnason et al.	The mitochondrial genome of the sperm whale and a new molecular reference for estimating eutherian divergence dates.	J Mol Evol	2000	10835487
Cao et al.	Interordinal relationships and timescale of eutherian evolution as inferred from mitochondrial genome data.	Gene	2000	11163972
Cassens et al.	Independent adaptation to riverine habitats allowed survival of ancient cetacean lineages.	Proc Natl Acad Sci U S A	2000	11027333
Givnish et al.	Molecular evolution, adaptive radiation, and geographic diversification in the amphiatlantic family Rapateaceae: evidence from ndhF sequences and morphology.	Evolution	2000	11209770
Huelsenbeck et al.	A compound poisson process for relaxing the molecular clock.	Genetics	2000	10747076
Yokoyama et al.	Molecular phylogeny of Coriaria, with special emphasis on the disjunct distribution.	Mol Phylogenet Evol	2000	10631039
Turner et al.	The glutamine synthetases of rhizobia: phylogenetics and evolutionary implications.	Mol Biol Evol	2000	10677854
Cheng et al.	Phylogeny of taxaceae and cephalotaxaceae genera inferred from chloroplast matK gene and nuclear rDNA ITS region.	Mol Phylogenet Evol	2000	10712841
Wang et al.	Phylogeny and divergence times in Pinaceae: evidence from three genomes.	Mol Biol Evol	2000	10779538
Xiang et al.	Timing the eastern Asian-eastern North American floristic disjunction: molecular clock corroborates paleontological estimates.	Mol Phylogenet Evol	2000	10860654
Sequeira et al.	Are flightless Galapaganus weevils older than the Galápagos Islands they inhabit?	Heredity	2000	10971687
Cropp et al.	The Central American squirrel monkey (Saimiri oerstedii): introduced hybrid or endemic species?	Mol Phylogenet Evol	2000	10991789
Knowles et al.	Tests of pleistocene speciation in montane grasshoppers (genus Melanoplus) from the sky islands of western North America.	Evolution	2000	11005300
Kumazawa et al.	Molecular phylogeny of osteoglossoids: a new model for Gondwanian origin and plate tectonic transportation of the Asian arowana.	Mol Biol Evol	2000	11110903
Bell et al.	Molecular phylogeny and biogeography of Linanthus (Polemoniaceae).	Am J Bot	2000	11118423
Printzen et al.	Molecular evidence for the diversification of extant lichens in the late cretaceous and tertiary.	Mol Phylogenet Evol	2000	11133192
Givnish et al.	Molecular evolution, adaptive radiation, and geographic diversification in the amphiatlantic family Rapateaceae: evidence from ndhF sequences and morphology.	Evolution	2000	11209770
Renner et al.	Timing transantarctic disjunctions in the Atherospermataceae (Laurales): evidence from coding and noncoding chloroplast sequences.	Syst Biol	2000	12116428
Hausdorf et al.	Early evolution of the bilateria.	Syst Biol	2000	12116476
Harris et al.	Molecular systematics of the old world monkey tribe papionini: analysis of the total available genetic sequences.	J Hum Evol	2000	10656777
Suzuki et al.	A molecular phylogenetic framework for the Ryukyu endemic rodents Tokudaia osimensis and Diplothrix legata.	Mol Phylogenet Evol	2000	10764531
Kuwayama et al.	Phylogenetic relationships among european red deer, wapiti, and sika deer inferred from mitochondrial DNA sequences.	Mol Phylogenet Evol	2000	10764539
Mulcahy et al.	Phylogeography and speciation of the morphologically variable, widespread species Bufo valliceps, based on molecular evidence from mtDNA.	Mol Phylogenet Evol	2000	11083932
Malone et al.	Phylogeography of the Caribbean rock iguana (Cyclura): implications for conservation and insights on the biogeographic history of the West Indies.	Mol Phylogenet Evol	2000	11083940
Bremer et al.	Early Cretaceous lineages of monocot flowering plants.	Proc Natl Acad Sci U S A	2000	10759567
Emerson et al.	Colonization and diversification of the species Brachyderes rugatus (Coleoptera) on the Canary Islands: evidence from mitochondrial DNA COII gene sequences.	Evolution	2000	10937264
CACCONE et al.	MOLECULAR BIOGEOGRAPHY - USING THE CORSICA-SARDINIA MICROPLATE DISJUNCTION TO CALIBRATE MITOCHONDRIAL RDNA EVOLUTIONARY RATES IN MOUNTAIN NEWTS (EUPROCTUS)	JOURNAL OF EVOLUTIONARY BIOLOGY	2000	None
Domanico et al.	Sequence variation in ribosomal DNA of Pacific (Clupea pallasi) and Atlantic herring (Clupea harengus)	CANADIAN JOURNAL OF FISHERIES AND AQUATIC SCIENCES	2000	None
Chambers et al.	Using molecular methods to understand the Gondwanan affinities of the New Zealand biota: three case studies	AUSTRALIAN JOURNAL OF BOTANY	2000	None
Chanderbali et al.	Phylogeny and historical biogeography of Lauraceae: Evidence from the chloroplast and nuclear genomes	ANNALS OF THE MISSOURI BOTANICAL GARDEN	2000	None
Des Marais et al.	Phylogenetic relationships and evolution of extant horsetails, equisetum, based on chloroplast DNA sequence data (rbcL and trnL-F)	INTERNATIONAL JOURNAL OF PLANT SCIENCES	2000	None
Hormiga et al.	Speciation on a conveyor belt: Sequential colonization of the Hawaiian islands by Orsonwelles spiders (Araneae, Linyphiidae)	SYSTEMATIC BIOLOGY	2000	None
Burridge et al.	Biogeographic history of geminate cirrhitoids (Perciformes : Cirrhitoidea) with east-west allopatric distributions across southern Australia, based on molecular data	GLOBAL ECOLOGY AND BIOGEOGRAPHY	2000	None
Collins et al.	Biogeographic and ecological forces responsible for speciation in Ateles	INTERNATIONAL JOURNAL OF PRIMATOLOGY	2000	None
Fukami et al.	Phylogenetic relationships in the coral family Acroporidae, reassessed by inference from mitochondrial genes	ZOOLOGICAL SCIENCE	2000	None
Hedges et al.	Continental breakup and the ordinal diversification of birds and mammals	NATURE	2000	None
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